View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_high_6 (Length: 653)
Name: NF5717_high_6
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_6 |
 | |
|
| [»] scaffold0060 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 30300926 - 30301503
Alignment:
| Q |
1 |
acggttttggaagatgtgatgatgaggaatgggtgttatcctaatgagagttcttatcagcatgtgttgtatggtttgattgatttgaagagatttgagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300926 |
acggttttggaagatgtgatgatgaggaatgggtgttatcctaatgagagttcttatcagcatgtgttgtatggtttgattgatttgaagagatttgagg |
30301025 |
T |
|
| Q |
101 |
aggctaaaggggttgttgagaagatgattttgaagggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagaagggttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30301026 |
aggctaaaggggttgttgagaagatggttttgaagggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagaagggttgat |
30301125 |
T |
|
| Q |
201 |
tgaggaagttgattggggtgttaggagtatggttaggatgggttttgttcctaggatggggatgtggagaccaattgttagatgtattgttgtttctaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30301126 |
tgaggaagttgattggggtgttaggagtatggttaggatgggttttgttcctaggatggggatgtggagaccaattgttagatgtattgttgtttctaga |
30301225 |
T |
|
| Q |
301 |
gatgttagtgtttcttttgataagattttggattctgttaacaattgaataagagaatgtttgtggtgannnnnnnaatgtgcattttataaccaataac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30301226 |
gatgttagtgtttcttttgataagattttggattctgttaacaattgaataagagaatgtttgtggtgatttttttaatgtgcattttataaccaataac |
30301325 |
T |
|
| Q |
401 |
ttgttaaaagagaatgttgaatgttttttggtggggaggaggtaatcgcatacgatacagagcatacggttcagcccaacaacaagagtactcgcattgc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30301326 |
ttgttaaaagagaatgttgaatgttttttggtggtgaggaggtaatcgcatacgatacagagcatacggttcagcccaacaacaagagtactcgcattgc |
30301425 |
T |
|
| Q |
501 |
aggatcgtttgaaatgcaatgtcaacgccgggttccatcatctgtcaaatagagctagctacatgtgctatctcagaa |
578 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30301426 |
aggatcgtttgaaatgcaatgtcgacgccgggttccatcatctgtcaaatagagctagctacatgtgctgtctcagaa |
30301503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 30302231 - 30302272
Alignment:
| Q |
591 |
gattttggatagtcatgatgattgaaaaatatgatgttggtg |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30302231 |
gattttggatagtcatgatgattgaaaaatatgatgttggtg |
30302272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 74 - 333
Target Start/End: Complemental strand, 63925 - 63668
Alignment:
| Q |
74 |
gtttgattgatttgaagagatttgaggaggctaaaggggttgttgagaagatgattttgaagggttttgtggtgagttatgattcttttaagggtttggt |
173 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
63925 |
gtttgattgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggtttagtggtgagttatgattcttttaagggtttggt |
63826 |
T |
|
| Q |
174 |
tttggggttttgtagagaagggttgattgaggaagttgattggggtgttaggagtatggttagga---tgggttttgttcctaggatggggatgtggaga |
270 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||| |||| |||||| || |||||||||||| |
|
|
| T |
63825 |
tttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtatggttgggatggtgggatttgttgtta----ggggatgtggagt |
63730 |
T |
|
| Q |
271 |
ccaattgttagatgtattgttgtttctagagatgttagtgtttcttttgataagattttggat |
333 |
Q |
| |
|
| |||||||| | | |||||||||||| |||||| |||||||| |||||| |||||||||| |
|
|
| T |
63729 |
caaattgtta-agtttgtgttgtttctagtgatgtttgtgtttctcttgatacgattttggat |
63668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 637
Target Start/End: Complemental strand, 63677 - 63631
Alignment:
| Q |
591 |
gattttggatagtcatgatgattgaaaaatatgatgttggtgttttt |
637 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
63677 |
gattttggatggtcatgatgattgaaaaatatgatgttggtggtttt |
63631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University