View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_70 (Length: 290)
Name: NF5717_high_70
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 50555595 - 50555332
Alignment:
| Q |
13 |
aatattaattaataataattgtaattaaacgtagatgaagaacaaacataacagagtagcattcatcatggtattgctgttatcaactctaattttaaaa |
112 |
Q |
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| T |
50555595 |
aatattaattaataataattgtaattaaacgtagatgaagaacaaacataacagagtagcattcatcatggtattgctcttatcaactctaattttaaaa |
50555496 |
T |
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| Q |
113 |
gggaaac----attagctacacataatctttcatggcattgtattgagtgatatgacaaagtgagaggttaattttctcacaataaattactataaagaa |
208 |
Q |
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| T |
50555495 |
gggaaacattaattagctacacataatctgtcatggcattgtattgagtgatatgaaaaagtgagaggttaattttctcacaataaattactat-aagaa |
50555397 |
T |
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| Q |
209 |
atatacaaaataaaatacaacatgagaacacactatattgacgggcataataattaaagagaaacc |
274 |
Q |
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| T |
50555396 |
atatacaaaataaaata-aacatgagaacacactatattgacgggcataataattaaagagaaacc |
50555332 |
T |
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