View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_77 (Length: 267)
Name: NF5717_high_77
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_77 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 27363148 - 27363399
Alignment:
| Q |
8 |
cgaagaatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcattaatgaatatatgtgatgtgattctttcaann |
107 |
Q |
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| T |
27363148 |
cgaaaaatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcaataatgaatatat-tgatgtgattctttcaatt |
27363246 |
T |
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| Q |
108 |
nnnnncataacaaaattttatcttgtgcttttttaagtaaaacataatcgataattagttggagaggtgagaaaggatcagtcatcagatgaatatgatt |
207 |
Q |
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| T |
27363247 |
tttttcataacaaatttttatcttgtgcttttttaagtaaaacataatcgataattagttggagagatgagaaagg-------atcagatgaatatgatt |
27363339 |
T |
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| Q |
208 |
aatagaaatggacacacttctatctctttgtaggaattctaatatcgagcatatgaggta |
267 |
Q |
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| T |
27363340 |
aatagaaatggacacacttctatctctttgtaggaattctaatatcgagcatatgaggta |
27363399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 45400678 - 45400431
Alignment:
| Q |
13 |
aatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcattaatgaatatatgtgatgtgattctttcaannnnnnn |
112 |
Q |
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| T |
45400678 |
aatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcaataatgaatatatgtgatgtgattctttcaattttttt |
45400579 |
T |
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| Q |
113 |
cataacaaaattttatcttgtgcttttttaagtaaaacataatcgataattagttggagaggt-gagaaaggatcagtcatcagatgaatatgattaata |
211 |
Q |
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| T |
45400578 |
cataacaaatttttatcttgtgc-tttttaagtaaaacataatcgataattagttggagaggtggagaaagg-------atcaaatgaatatgattaata |
45400487 |
T |
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| Q |
212 |
gaaatggacacacttctatctctttgtaggaattctaatatcgagcatatgaggta |
267 |
Q |
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| T |
45400486 |
gaaatggacacacttatatctctttgtaggaattctaatatcgagcgtatgaggta |
45400431 |
T |
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