View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_high_8 (Length: 615)
Name: NF5717_high_8
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_8 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Complemental strand, 1630533 - 1629944
Alignment:
| Q |
19 |
cttatgtacttttatatgaatatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1630533 |
cttatgtacttttatatgaatatatatagtcatactaatcaaaaattttggattcgtcacttgcagaaacagaagaagggtcattttcaaattggttttc |
1630434 |
T |
|
| Q |
119 |
tgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1630433 |
tgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgct |
1630334 |
T |
|
| Q |
219 |
ttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630333 |
ttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgaca |
1630234 |
T |
|
| Q |
319 |
atattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtga |
418 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630233 |
atattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtga |
1630134 |
T |
|
| Q |
419 |
gttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630133 |
gttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggct |
1630034 |
T |
|
| Q |
519 |
ttctta----catacaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
604 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630033 |
ttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
1629944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 1607540 - 1607121
Alignment:
| Q |
19 |
cttatgtactttt-atatgaatatatata--gtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggtt |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607540 |
cttatgtactttttatatgaatatatatatagtcatactaatcaaaatttctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggtt |
1607441 |
T |
|
| Q |
116 |
ttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
1607440 |
ttctgtgcatgaaaggaagcttttgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaggct |
1607341 |
T |
|
| Q |
216 |
gctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607340 |
gctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatg |
1607241 |
T |
|
| Q |
316 |
acaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcagg |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1607240 |
acaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcagg |
1607141 |
T |
|
| Q |
416 |
tgagttatattccatctcct |
435 |
Q |
| |
|
||| ||||||| ||| |||| |
|
|
| T |
1607140 |
tgaattatatttcatttcct |
1607121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 39 - 435
Target Start/End: Complemental strand, 1624538 - 1624142
Alignment:
| Q |
39 |
tatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
138 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624538 |
tatatatagtcatactaatcaaaatttctggatccgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
1624439 |
T |
|
| Q |
139 |
tgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
238 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624438 |
tgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
1624339 |
T |
|
| Q |
239 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624338 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
1624239 |
T |
|
| Q |
339 |
ggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
435 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
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|
| T |
1624238 |
gggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1624142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 10819740 - 10820160
Alignment:
| Q |
19 |
cttatgtactttt-atatgaatatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaa------gaagggtcatttccaaatt |
111 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| ||||| |||| ||||||| ||||| |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
10819740 |
cttatgtactttttatataaatatatatagtcatactaatctaaatttctggatccgtca-ttgcagaaacagaaatagaagaagggtcacttccaaatt |
10819838 |
T |
|
| Q |
112 |
ggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
10819839 |
ggttttctgtgcatgaaaggaagcttttgcagtctaagtctccaatgaagttcaatcttgtggtggcaaaagatggttctggacagtacaagactgtgca |
10819938 |
T |
|
| Q |
212 |
agctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10819939 |
agctgctttaaatgctgctgctaagagaaaatacaagacaaggtatgtgatacatgtgaagaaaggtgtttataaagagaacattgaggttgctgttcat |
10820038 |
T |
|
| Q |
312 |
aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacag |
411 |
Q |
| |
|
||||| || |||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
10820039 |
aatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacag |
10820138 |
T |
|
| Q |
412 |
caggtgagttatattccatctc |
433 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
10820139 |
ccggtgagttatattccatctc |
10820160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 444 - 604
Target Start/End: Original strand, 10820598 - 10820754
Alignment:
| Q |
444 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
543 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || | |
|
|
| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
|
| Q |
544 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 561 - 604
Target Start/End: Complemental strand, 1606689 - 1606646
Alignment:
| Q |
561 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 75 - 424
Target Start/End: Complemental strand, 18785528 - 18785179
Alignment:
| Q |
75 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtgg |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18785528 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctatgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatattgtgg |
18785429 |
T |
|
| Q |
175 |
tggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaa |
274 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785428 |
tggcaaaagatggttctggacagtacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtgaagaa |
18785329 |
T |
|
| Q |
275 |
aggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagt |
374 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18785328 |
aggtgtttataaagagaacattgaggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagt |
18785229 |
T |
|
| Q |
375 |
gttcaaggtggttataccacttatagctctgcaacagcaggtgagttata |
424 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785228 |
gttcaaggtggttttaccacttatagctctgcaacagcaggtgaattata |
18785179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 210 - 416
Target Start/End: Complemental strand, 12803590 - 12803384
Alignment:
| Q |
210 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttc |
309 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg-ggaag |
12803492 |
T |
|
| Q |
310 |
at-aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaa |
408 |
Q |
| |
|
|| ||||| ||||||||| |||| |||||||| | |||||| | ||||||||| ||||| |||||||| ||||| ||| || ||||||||||| | |
|
|
| T |
12803491 |
atgaatgataatattatgttggtaggtgatggaagtagaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgcca |
12803392 |
T |
|
| Q |
409 |
cagcaggt |
416 |
Q |
| |
|
| |||||| |
|
|
| T |
12803391 |
ctgcaggt |
12803384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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