View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_81 (Length: 262)
Name: NF5717_high_81
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_81 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 45381239 - 45380997
Alignment:
| Q |
16 |
ttatgtataatttgcagttgtaacaactgttgaattatttaggtaggagtagattaattaagataggnnnnnnngaggagaatttgtgttcataacatag |
115 |
Q |
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| T |
45381239 |
ttatgtataatttgcagttgtaacaactattgaattatttaggtaggagtagattaattaagataggaaaaaaagaggagaatttgtgttcataacatag |
45381140 |
T |
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| Q |
116 |
caaaagtaacgagatatagatccttaacttgcacgcgaaaatagaacaatgtgagacgtgttcattgtgtgtgattctagatatgtttttagtttagaaa |
215 |
Q |
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| T |
45381139 |
taaaagtaacgagatatagatccttaacttgcacgcgaaaatagaacaatgtgagacgtgttcattgtgtgtgattctagatatgtttttagtttagaaa |
45381040 |
T |
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| Q |
216 |
ttcttgccaaaaataatggtgtctactgctaatgatgatgtcc |
258 |
Q |
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| T |
45381039 |
ttcttgccaaaaataatggtgtctactgctaatgttgatgtcc |
45380997 |
T |
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