View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_89 (Length: 251)
Name: NF5717_high_89
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 35742966 - 35743193
Alignment:
| Q |
1 |
aagtcactgattcgatcaatttgatcctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatatgacttc |
100 |
Q |
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| T |
35742966 |
aagtcactgattcgatcaatttgatcctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatctgacttc |
35743065 |
T |
|
| Q |
101 |
aaaataccgatgcaacacaagaaatatcagaagagtcaatgcaaaatctaactttgaatgccctaataataacaaatcatagtgatcaatcatgaataca |
200 |
Q |
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| T |
35743066 |
aaaatactgatgcaacacaagaaatatcagaagagtcaatgcaaaatctaactttgaatgccctaataataacaaatcatagtgatcaatcatgaataca |
35743165 |
T |
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| Q |
201 |
aaatctaactttgatgccctaataaaat |
228 |
Q |
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|
|||||||||||||||||||||||||||| |
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| T |
35743166 |
aaatctaactttgatgccctaataaaat |
35743193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 35749376 - 35749425
Alignment:
| Q |
40 |
agagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattac |
89 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
35749376 |
agagtcataaggtaactacaaattcaagcaagcacaagtgtaaatattac |
35749425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 16865311 - 16865281
Alignment:
| Q |
40 |
agagtcataagtgaactacaaattcaagcaa |
70 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16865311 |
agagtcataagtgaactacaaattcaagcaa |
16865281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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