View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_91 (Length: 251)
Name: NF5717_high_91
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_91 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 49820259 - 49820378
Alignment:
| Q |
15 |
tcatcactaattctcctacccattatatgtggcatcaaaatttaacaatttattaggtctttaatatcctcgattaaggtgttctcatttatcatatgct |
114 |
Q |
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| T |
49820259 |
tcatcactaatcctcctacccattatatgtggcatcaaaatttaacaatttattaggtctttaatatcctcgattaaggtgttctcatttatcatatact |
49820358 |
T |
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| Q |
115 |
ttatgccatttcgcactact |
134 |
Q |
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|||||||||||||||||||| |
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| T |
49820359 |
ttatgccatttcgcactact |
49820378 |
T |
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Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 49821100 - 49821188
Alignment:
| Q |
126 |
cgcactactcatcccaccagcatcacaatgacactactactatatggtggtcggagctcttacgctaataaaagtaaggagaacctttg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49821100 |
cgcactactcatcccaccagcatcacaatgacactactactatatggtggtcggagctcttacgctaataaaagtaaggagaacctttg |
49821188 |
T |
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