View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_97 (Length: 250)
Name: NF5717_high_97
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_97 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28277868 - 28277629
Alignment:
| Q |
1 |
ctgaactcttaatatttactgcattgttatcaatgtcgacggaagttgccttcgcaatccaattatggatggctacggtggtatcctttgtaattcttca |
100 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28277868 |
ctgaactcttaatatttcctgcactgttatcaatgtcgacggaagttgccttggcaatccaattatggatggctacggtggtatcctttgtaactcttca |
28277769 |
T |
|
| Q |
101 |
tatgtgtggcgtgctagtttatcacgacataattcagaatcaacatacattcttcaagttgagttttatgtcattcatcatgatttatctcttataaagg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
28277768 |
tatgtgtggcgtgctagtttatcacgacataattcagaatcaacatacattcttcaagttgagtttcatgtcattcatcatgatttatctcttgtaaaga |
28277669 |
T |
|
| Q |
201 |
gtatgagcattcacaactcggtctgctatactgcttcttc |
240 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
28277668 |
gtatgagcattcacaactcggtctgttatactgcttcttc |
28277629 |
T |
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