View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_1 (Length: 848)
Name: NF5717_low_1
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 814; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 1 - 830
Target Start/End: Original strand, 14868860 - 14869689
Alignment:
| Q |
1 |
aacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868860 |
aacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatc |
14868959 |
T |
|
| Q |
101 |
aaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccattttt |
200 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868960 |
aaaaagtcacctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccattttt |
14869059 |
T |
|
| Q |
201 |
caaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14869060 |
caaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacgaggaatggaaagct |
14869159 |
T |
|
| Q |
301 |
tcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869160 |
tcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctga |
14869259 |
T |
|
| Q |
401 |
tttcatagtcactgacatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaatttgcattagtggaagttactttgctcat |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14869260 |
tttcatagtcactgacatgttctatccttggagtgttgatgttgctgatgaattgggaattccaaggttaatttgtattagtggaagttactttgctcat |
14869359 |
T |
|
| Q |
501 |
tctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869360 |
tctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatga |
14869459 |
T |
|
| Q |
601 |
aacgtttacaacttccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagattcagagagaaaaagctatggatcactgtt |
700 |
Q |
| |
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| T |
14869460 |
aacgtttacaacttccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagattcagagagaaaaagctatggatcactgtt |
14869559 |
T |
|
| Q |
701 |
tgatagtcatgagattgagagtacatatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaa |
800 |
Q |
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| T |
14869560 |
tgatagtcatgagattgagagtacatatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaa |
14869659 |
T |
|
| Q |
801 |
gatgattcggataaagcgggtagagggcat |
830 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
14869660 |
gatgattcggataaagcgggtagagggcat |
14869689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 11 - 826
Target Start/End: Complemental strand, 16909800 - 16908980
Alignment:
| Q |
11 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaa--gtc |
108 |
Q |
| |
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||||||||||| | | |||| ||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
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| T |
16909800 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaacaatgttaaaagctgtttttcttccctttatatcaaaaaaagtc |
16909701 |
T |
|
| Q |
109 |
acctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16909700 |
acctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctc |
16909601 |
T |
|
| Q |
209 |
aatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgcc |
308 |
Q |
| |
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||||||| |||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
16909600 |
catcgaccacgattcaagtcgcggtcggtccattagaactcacattgtcaagtttccacaagtacctggtttgccacaaggaatggaaagtttcaatgct |
16909501 |
T |
|
| Q |
309 |
gacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatag |
408 |
Q |
| |
|
||||||||||| || ||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
16909500 |
gacactcctaaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaactatttcgtgacatgaaacctgatttcatag |
16909401 |
T |
|
| Q |
409 |
tcactgacatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaatttgcattagtggaagttactttgctcattctgcaat |
508 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |
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| T |
16909400 |
tcactgacatgttttatccttggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaat |
16909301 |
T |
|
| Q |
509 |
gaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgttta |
608 |
Q |
| |
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||||||||||||||| || |||||| || |||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
16909300 |
gaactctattgaacaatttgaacctcatgccaaagttaaatcgaatagcgtaagttttctgcttcctgggttgcctcacaacgtggaaatgacgcgtttg |
16909201 |
T |
|
| Q |
609 |
caacttccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagattcagagagaaaaagctatggatcactgtttgatag-- |
706 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
16909200 |
caacttccggattggcttagagcaccaaatggttatacttatttgatgaagatgatcaaagattcagagaaaaaaagctatggatcattgtttgatagct |
16909101 |
T |
|
| Q |
707 |
-tcatgagattgagagtacatatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatga |
805 |
Q |
| |
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| |||||||||| |||| |||||||| ||||||||| ||| ||||||| ||||||||||| |||||||||||||| | ||| ||||| ||||||| |
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| T |
16909100 |
attatgagattgaaggtacttatgaggactattacaagatagccatgggaagtaagagttggagtgtgggaccagtttctttgtggatgaacaaagatga |
16909001 |
T |
|
| Q |
806 |
ttcggataaagcgggtagagg |
826 |
Q |
| |
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||| |||||||| |||||||| |
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| T |
16909000 |
ttcagataaagctggtagagg |
16908980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 12611241 - 12611293
Alignment:
| Q |
126 |
gacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccac |
178 |
Q |
| |
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||||| ||||| || ||||||||||||||||||||| | |||||||||||||| |
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|
| T |
12611241 |
gacatggcaagactatttgctatgcatggtgtggatatcaccataatcaccac |
12611293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 726 - 814
Target Start/End: Original strand, 12613301 - 12613389
Alignment:
| Q |
726 |
tatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataa |
814 |
Q |
| |
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||||||||||||||||||| ||| | ||||| ||| |||||||| | ||||||||||| |||||| |||||||||| ||| ||||| |
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| T |
12613301 |
tatgaggagcattacaagaatgcatttggaacaaagtgttggagcttaggaccagtttcattatgggcaaaccaagatgtttctgataa |
12613389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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