View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_100 (Length: 249)
Name: NF5717_low_100
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_100 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 40266581 - 40266365
Alignment:
| Q |
14 |
aaaatcatattctcctttccaagttctttatattatagcatactagattatttatgatgcaatttgtgctgctatggtttctaatcatacttgagattct |
113 |
Q |
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| T |
40266581 |
aaaatcatattctcctttccaagttctttatattatagcatactagattatttatgatgcaatttgtgctgctacggtttctaatcatacttgagattct |
40266482 |
T |
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| Q |
114 |
cacgttttagaacaattgctggatggagaaagatcacacttggttgttgcaatttctgggtgtgttgtttctgaaaccccaattaagtgcgagttgactg |
213 |
Q |
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| T |
40266481 |
cacgtttcagaacaattgctggatggagaaagatcacacttggttgttgcaatttctgggtgtgttgtttctgaaaccccaattaagtgcgagttgactg |
40266382 |
T |
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| Q |
214 |
gtttaagaggtgttgta |
230 |
Q |
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| T |
40266381 |
gtttaagaggtgttgta |
40266365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 40285273 - 40285100
Alignment:
| Q |
54 |
tactagattatttatgatgcaatttgtgctgctatggtttctaatcatacttgagattct-cacgttttagaacaattgctggatggagaaagatcacac |
152 |
Q |
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| T |
40285273 |
tacttgattcttgatgaagcaatttgtgctgctgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggttacca |
40285174 |
T |
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| Q |
153 |
ttggttgttgcaatttctgggtgtgttgtttctgaaaccccaattaagtgcgagttgactggtttaagaggtgt |
226 |
Q |
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| T |
40285173 |
ttgcttgttgcaatttctggcaacgttgtttctgaaaccccaattaagtgcgagataactggtttaagaggtgt |
40285100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 40258081 - 40257921
Alignment:
| Q |
68 |
tgatgcaatttgtgctgctatggtttctaatcatacttgagattctcacgtttt-agaacaattgctggatggagaaagatcacacttggttgttgcaat |
166 |
Q |
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| T |
40258081 |
tgatgcaatctgtactgttgtggtttctgatcatccttgggattcttgttttttcagcacaactgttggatgaagaaatatttcccttggttgttgcaat |
40257982 |
T |
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| Q |
167 |
ttctgggtgtgttgtttctgaaaccccaattaagtgcgagttgactggtttaagaggtgtt |
227 |
Q |
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| T |
40257981 |
ttctggaagagtgggttctgaaactccaattagctgcgagttcagtggtttaagaggtgtt |
40257921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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