View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_low_103 (Length: 247)

Name: NF5717_low_103
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_low_103
NF5717_low_103
[»] chr3 (13 HSPs)
chr3 (1-236)||(11496631-11496866)
chr3 (19-236)||(5966679-5966896)
chr3 (14-236)||(2920391-2920613)
chr3 (34-236)||(11490191-11490393)
chr3 (81-238)||(4079238-4079395)
chr3 (93-236)||(5052754-5052897)
chr3 (81-238)||(4059629-4059786)
chr3 (85-217)||(4130837-4130969)
chr3 (81-236)||(4114102-4114259)
chr3 (14-129)||(7490059-7490174)
chr3 (85-179)||(4091370-4091464)
chr3 (85-194)||(910730-910839)
chr3 (157-220)||(7491565-7491628)
[»] scaffold0603 (1 HSPs)
scaffold0603 (14-236)||(3854-4076)
[»] chr8 (1 HSPs)
chr8 (14-236)||(18388884-18389106)
[»] chr4 (1 HSPs)
chr4 (15-223)||(5989402-5989610)
[»] chr5 (1 HSPs)
chr5 (22-221)||(16447669-16447868)
[»] chr1 (2 HSPs)
chr1 (14-236)||(17312608-17312824)
chr1 (81-236)||(13934245-13934400)
[»] scaffold0267 (1 HSPs)
scaffold0267 (130-237)||(19559-19666)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11496631 - 11496866
Alignment:
Q  1 tcaagacactgatgattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgc 100  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  11496631 tcaaggcactgtagattgaccaattctcctatgtcctcgggcaattcaacgagccttctacagcctgccaataacaagaactgcagattgtaaagcttgc 11496730  T
Q  101 atgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  11496731 atgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccggaggtataacaaatttccaatagatttgggaacctcggtgatactctt 11496830  T
Q  201 gtagtttgacaaagacaacacacgcaactgtttcat 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  11496831 gtagtttgacaaagacaacacacgcaactgtttcat 11496866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 5966896 - 5966679
Alignment:
Q  19 accaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatc 118  Q
    ||||||| ||| |||||||| |||||||||  |||| || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||  ||||||      
T  5966896 accaattttcccatgtcctctggcaattcagtgagccttttacagcctgacaacaacaagaactgcagattgtaaagcttgcatgtttcactaggcaact 5966797  T
Q  119 tttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaa 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  5966796 tttcaatcttagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatgcttttgtagtttgtcaaagacaa 5966697  T
Q  219 cacacgcaactgtttcat 236  Q
    ||||||||| ||||||||    
T  5966696 cacacgcaattgtttcat 5966679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 2920613 - 2920391
Alignment:
Q  14 gattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataagg 113  Q
    |||| ||||||| ||| |||||||| |||||||||| || | || |||| |||| ||| ||||||||||| ||||||||||||| |||||||||| ||||    
T  2920613 gattaaccaattttcccatgtcctctggcaattcaatgaaccttttacatcctgacaacaacaagaactgaagattgtaaagctggcatgtttcagaagg 2920514  T
Q  114 caatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaa 213  Q
    ||  |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2920513 cagcctttcaatctcagtatgagaaagatttaagtaccgcaggtataacaaatttccaatagagttgggaacctcagtgatactcttgtagtttgacaaa 2920414  T
Q  214 gacaacacacgcaactgtttcat 236  Q
    ||||||||||| |||||||||||    
T  2920413 gacaacacacgtaactgtttcat 2920391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 11490191 - 11490393
Alignment:
Q  34 tcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgt 133  Q
    ||||| || ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||| |||||||| |||||||    
T  11490191 tcctccggaaattcaatgagctttctacagcctgccaacaacaagaactgcagattgtaaagcttgcatgttgcagaaggcaacctttcaatcttagtgt 11490290  T
Q  134 gagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgttt 233  Q
    | ||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||| ||||||||| ||||||||||||| ||||| ||||| || |||||    
T  11490291 gggaaagatttaagtaccgcaggcataacaaattttcaatagagttgggaatctcggtgatactcctgtagtttgacaaggacaaaacacgtaattgttt 11490390  T
Q  234 cat 236  Q
    |||    
T  11490391 cat 11490393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 81 - 238
Target Start/End: Original strand, 4079238 - 4079395
Alignment:
Q  81 ctgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttg 180  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| | ||||||||| |||||||||| ||||||||||||||| |||    
T  4079238 ctgtagattgtaaagcttgcatgtttcagaaggcaacctttcaatactagtgtgagagacatttaagtatcgcaggtatatcaaatttccaatagagttg 4079337  T
Q  181 ggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcatct 238  Q
    || | |||||||||| | | ||||||||||| |||||||||| | |||||||||||||    
T  4079338 ggcaactcagtgatattatggtagtttgacagagacaacacatgtaactgtttcatct 4079395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 5052897 - 5052754
Alignment:
Q  93 aagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtg 192  Q
    ||||||||||||| || ||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |||    
T  5052897 aagcttgcatgttgcagaaggcaacctttcaatcttagtgtgggaaagatttaagtacctcaggtataacaaattttcaatagagttgggaacctcggtg 5052798  T
Q  193 atactcttgtagtttgacaaagacaacacacgcaactgtttcat 236  Q
    |||||| |||||||||||||||||||||| || || ||||||||    
T  5052797 atactcctgtagtttgacaaagacaacacgcgtaattgtttcat 5052754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 238
Target Start/End: Original strand, 4059629 - 4059786
Alignment:
Q  81 ctgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttg 180  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| | ||||||||| |||||||||| ||||||||||||||| |||    
T  4059629 ctgtagattgtaaagcttgcatgtttcagaaggcaacctttcaatactagtgtgagagacatttaagtatcgcaggtatatcaaatttccaatagagttg 4059728  T
Q  181 ggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcatct 238  Q
    || | | |||||||| | | ||||||||||| |||||||||| | |||||||||||||    
T  4059729 ggcaacgcagtgatattatggtagtttgacagagacaacacatgtaactgtttcatct 4059786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 4130969 - 4130837
Alignment:
Q  85 agattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaa 184  Q
    ||||||||||||||||||||||||   |||||  ||  ||| | ||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||    
T  4130969 agattgtaaagcttgcatgtttcagcgggcaacattctaatctcagtgtgagagagatttaagtatcgcaggtatatcaaatttccaatagaattgggaa 4130870  T
Q  185 cctcagtgatactcttgtagtttgacaaagaca 217  Q
     |||||||||| |||||||||||||||||||||    
T  4130869 actcagtgatattcttgtagtttgacaaagaca 4130837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 4114102 - 4114259
Alignment:
Q  81 ctgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttg 180  Q
    |||||||||| ||||||||||||||||| ||||||| |||| |||| ||||| |||| | ||||||||| |||||||||| ||||||||||||||| |||    
T  4114102 ctgtagattgcaaagcttgcatgtttcagaaggcaacctttgaatactagtgcgagagacatttaagtatcgcaggtatatcaaatttccaatagagttg 4114201  T
Q  181 ggaacctcagtgatactc--ttgtagtttgacaaagacaacacacgcaactgtttcat 236  Q
    || | || ||||||| ||   |||| ||||| | |||||||||||| |||||||||||    
T  4114202 ggcaacttagtgatattcctgtgtaatttgatagagacaacacacgtaactgtttcat 4114259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 7490059 - 7490174
Alignment:
Q  14 gattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataagg 113  Q
    |||| ||||||| ||| |||||||| || ||||||| |||| ||||||||||| |||| || |||||||| |||||||||||||||||||||||| ||||    
T  7490059 gattaaccaattttccaatgtcctccggaaattcaatgagccttctacagcctaccaacaataagaactgcagattgtaaagcttgcatgtttcagaagg 7490158  T
Q  114 caatctttcaatatta 129  Q
    ||| ||||||||||||    
T  7490159 caacctttcaatatta 7490174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 4091370 - 4091464
Alignment:
Q  85 agattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagattt 179  Q
    |||||||||||||||||||||||| | ||||| ||| ||||  |||||| ||| ||||||||||| || ||||||| |||| |||||||||||||    
T  4091370 agattgtaaagcttgcatgtttcagagggcaaccttccaatcatagtgtcagagagatttaagtatcgtaggtatatcaaacttccaatagattt 4091464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 910730 - 910839
Alignment:
Q  85 agattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaa 184  Q
    ||||| ||||||||||||||| || ||||||| ||||||||   ||||| ||| ||||| ||||| |||||||||| |||||| |||||||||| ||| |    
T  910730 agattttaaagcttgcatgttgcagaaggcaacctttcaatcccagtgtaagagagattcaagtatcgcaggtatatcaaattcccaatagattcgggca 910829  T
Q  185 cctcagtgat 194  Q
     |||||||||    
T  910830 actcagtgat 910839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 7491565 - 7491628
Alignment:
Q  157 tataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaaca 220  Q
    |||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||| |||||||    
T  7491565 tataacaaatttccaatagagttgcgaacctcggtgatacttttgtagtttgacaatgacaaca 7491628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 3854 - 4076
Alignment:
Q  14 gattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataagg 113  Q
    |||| ||||||| ||| |||||||| |||||||||  ||||||| ||||||||| ||||||||||||||| ||||||||||||| ||| |||||| ||||    
T  3854 gattaaccaattttccaatgtcctctggcaattcagtgagctttttacagcctgacaataacaagaactgcagattgtaaagctcgcaagtttcagaagg 3953  T
Q  114 caatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaa 213  Q
    ||| ||||||||  ||||||| ||||||||||||||| | |||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||||||    
T  3954 caacctttcaatcatagtgtgggaaagatttaagtactgaaggtgtaacaaatttgcaatagagttgggaacctcagtgatactcttgtaatttgacaaa 4053  T
Q  214 gacaacacacgcaactgtttcat 236  Q
    |||||||| || || ||||||||    
T  4054 gacaacacgcgtaattgtttcat 4076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 18389106 - 18388884
Alignment:
Q  14 gattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataagg 113  Q
    |||||||||||| ||| |||||||  |||||||||  || | || ||||||||| ||| | ||||||||| |||||||||||||||||||||||| ||||    
T  18389106 gattgaccaattttccaatgtcctgtggcaattcagtgaaccttttacagcctgacaacagcaagaactgcagattgtaaagcttgcatgtttcagaagg 18389007  T
Q  114 caatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaa 213  Q
    ||| |||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  18389006 caacctttcaatcttagtatgagaaagattcaagtagcgcaggtgtaacaaatttccaattgttttgggaacctcagtgatactcttgtagtttgacaaa 18388907  T
Q  214 gacaacacacgcaactgtttcat 236  Q
    |||| ||  || |||||||||||    
T  18388906 gacagcatgcgtaactgtttcat 18388884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 5989610 - 5989402
Alignment:
Q  15 attgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataaggc 114  Q
    ||||||||||| ||| |||||||| || || |||| |||| || |||||||   ||| |||||||| || ||||||||||| |||||||||||| |||||    
T  5989610 attgaccaattttcccatgtcctccggtaactcaatgagccttttacagcccaacaacaacaagaattgaagattgtaaagattgcatgtttcagaaggc 5989511  T
Q  115 aatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaag 214  Q
    || ||||||||||| |||||||||||||| |||||| ||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  5989510 aacctttcaatatttgtgtgagaaagattaaagtactgcaagtataccaaatttccaatagacttgggaaccttagtgatactcttgtagtttgacaaag 5989411  T
Q  215 acaacacac 223  Q
    | |||||||    
T  5989410 ataacacac 5989402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 16447868 - 16447669
Alignment:
Q  22 aattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatcttt 121  Q
    |||| ||| ||||| || |||||||||  |||| || ||||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  16447868 aattttcccatgtcttccggcaattcagtgagccttttacagcctgacaacaacaagaactgtagattgtaaagcttgcatgttttagaaggcaaccttt 16447769  T
Q  122 caatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacac 221  Q
    |||| |  |||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||  |||||||||||||||| |||||    
T  16447768 caatctgtgtgtgagaaagatttaggtaccgcaggtatatcaaacttccaatagagttgggaacctcagtgatacttctgtagtttgacaaagataacac 16447669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 17312824 - 17312608
Alignment:
Q  14 gattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaactgtagattgtaaagcttgcatgtttcataagg 113  Q
    |||||||||||||||||||||  || |||||||||| |||| || |||| ||||||||      |||||| |||||||||||||||||||||||| ||||    
T  17312824 gattgaccaattctcctatgtggtctggcaattcaatgagccttgtacaacctgccaa------gaactgcagattgtaaagcttgcatgtttcagaagg 17312731  T
Q  114 caatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaa 213  Q
    ||| ||| |||| ||||||||||||| |||||||||||||||| | ||||| ||||||||||| || ||||||| | |||||||||||||||||||||||    
T  17312730 caaccttccaatcttagtgtgagaaacatttaagtaccgcaggaaaaacaattttccaatagacttcggaaccttaatgatactcttgtagtttgacaaa 17312631  T
Q  214 gacaacacacgcaactgtttcat 236  Q
    |||||| |||| || ||||||||    
T  17312630 gacaacgcacgtaattgtttcat 17312608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 13934400 - 13934245
Alignment:
Q  81 ctgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttg 180  Q
    |||||||||||||||||||||||||||| ||||||| |||  |||   |||| |||| ||||||||||| ||||||||||  |||||||||||||| |||    
T  13934400 ctgtagattgtaaagcttgcatgtttcagaaggcaaccttctaatcccagtgcgagagagatttaagtatcgcaggtatattaaatttccaatagagttg 13934301  T
Q  181 ggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 236  Q
    || | || ||||||| ||||||| ||||| | |||||||||| | |||||||||||    
T  13934300 ggcaacttagtgatattcttgtaatttgatagagacaacacatgtaactgtttcat 13934245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 19666 - 19559
Alignment:
Q  130 gtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaact 229  Q
    |||| ||| ||||||||||| |||||  ||| ||||||||||||||| ||||| | ||| ||||||||| ||||||||||||| |||| ||| || || |    
T  19666 gtgttagagagatttaagtatcgcagacatatcaaatttccaatagaattgggcaactcggtgatactcctgtagtttgacaacgacagcacgcgtaatt 19567  T
Q  230 gtttcatc 237  Q
    ||||||||    
T  19566 gtttcatc 19559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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