View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_104 (Length: 246)
Name: NF5717_low_104
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33769142 - 33769369
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33769142 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaag |
33769241 |
T |
|
| Q |
101 |
gtctatgatagggacactgaacttggaagatgcttcactttcatgatcagagttcaagttcaaattgggagaatgaaacatacgtgggatctttgtcgta |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33769242 |
gtctatgatagggacactgaacttggaagatgcttcactttcatgatcagagttcaagttcaaattgggagaatgaaacatacgtgggatctttgtcgtc |
33769341 |
T |
|
| Q |
201 |
catattccagattctaagaggcctttca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
33769342 |
catattccagattctaagaggcctttca |
33769369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33772424 - 33772657
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaag |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| || || |||||||||||||| ||||||||||||||||| |||||||| | |||| ||||| |||||| |
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| T |
33772424 |
catgattaatcacttgaaaacatccccattcacgacaagcacttcgaatcttgtcaagtacctcagcatgcaaacatgggtttgtgtgtatattttgaag |
33772523 |
T |
|
| Q |
101 |
gtctatgatagggacactgaacttggaagatgcttcactttcatgatcaga------gttcaagttcaaattgggagaatgaaacatacgtgggatcttt |
194 |
Q |
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|
||||||||| |||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
33772524 |
gtctatgatggggacattgaacttggaagatgggtcactttcatgagtggagttcatgttcaagttcaaattgggataatggaacatacgtgggatcttt |
33772623 |
T |
|
| Q |
195 |
gtcgtacatattccagattctaagaggcctttca |
228 |
Q |
| |
|
||| ||||||||||||||| ||||| ||||||| |
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|
| T |
33772624 |
gtcacacatattccagattccaagagacctttca |
33772657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33764282 - 33764413
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||| || |||| ||||||| |||| |||||||||| |||||| ||||||||||| |
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| T |
33764282 |
catgattaatcacttggaaaaatccccactccttgcatgcactacgaattttgtcaactacctcaacatgcaaacatggattagtgttcatatcttgaag |
33764381 |
T |
|
| Q |
101 |
gtctatgatagggacactgaacttggaagatg |
132 |
Q |
| |
|
||| ||||| ||||||| ||||| ||||||| |
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|
| T |
33764382 |
gtcaatgatggggacacacaactttgaagatg |
33764413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 33764468 - 33764522
Alignment:
| Q |
172 |
aatgaaacatacgtgggatctttgtcgtacatattccagattctaagaggccttt |
226 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
33764468 |
aatggaacatacgtgggatctttgtcacgcatgttccagattctacgaggccttt |
33764522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26396096 - 26396048
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaat |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
26396096 |
catgattaatcacttgaaaaaatccccactccttacatgcagttcgaat |
26396048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26168485 - 26168446
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgc |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26168485 |
catgattaatcacttgaaaaaatccccactccttgcatgc |
26168446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25224897 - 25224936
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgc |
40 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25224897 |
catgattaatcacttgaaaaaatccctactccttgcatgc |
25224936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8349242 - 8349194
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaat |
49 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
8349242 |
catgattaatcactttaaaaaatccccactccttgcatgcagttcgaat |
8349194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49465283 - 49465331
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaat |
49 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
49465283 |
catgattaatcacctgaaaaaatccccactcatggcatgcacttcgaat |
49465331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29462898 - 29462850
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaat |
49 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
29462898 |
catgattaatcacctgaaaaaatccccactcatggcatgcacttcgaat |
29462850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19877567 - 19877617
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatct |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||| |||||| |
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|
| T |
19877567 |
catgattaatcacttgaaaaaatccccactcattgcaggctctttgaatct |
19877617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19844653 - 19844605
Alignment:
| Q |
1 |
catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaat |
49 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
19844653 |
catgattaatcacctgaaaaaatccccactcatgacatgcacttcgaat |
19844605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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