View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_11 (Length: 598)
Name: NF5717_low_11
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 298 - 583
Target Start/End: Original strand, 27601987 - 27602271
Alignment:
| Q |
298 |
aattttgagtttatttatttgtattttaagaccgaaagatcaactgaaccaaatcaaactgaatattatcaatttactttagttttgttccacttctcaa |
397 |
Q |
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| T |
27601987 |
aattttgagtttatttatttgtattttaagacggaaagataaactgaaccgaatcaaactgaatattatcaatttactttggttttgttccacttctaaa |
27602086 |
T |
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| Q |
398 |
aaatgttgaaaatcgaaagaaaccaaatcggtcggtttgcatatatttttgactaaaactcaaagcaaacaaaccattaaacactataagaaatatgaaa |
497 |
Q |
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| T |
27602087 |
aaatgttgaaaatcaaaagaaaccaaatcagtcggtttgcatagatttttgactaaaactcaaagcaaacaaa-cattaaacactataagaaatatgaaa |
27602185 |
T |
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| Q |
498 |
tctgaatatactattattagaagaaatatgaagtctgaatatttattctctataaacttgtctattgtttttatacggatagattt |
583 |
Q |
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| T |
27602186 |
tctgaatatactattattagaagaaatatgaagtcttaatatttattctctataaacttgtctattgtttttatacggatagattt |
27602271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 27601706 - 27601899
Alignment:
| Q |
2 |
tggactcattcagctctcgttttcaatttaaaaatgtaatgaaccgacgaaccaaaccgataacttaataatgtgatgtcttttgcaaatatctaccagc |
101 |
Q |
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| T |
27601706 |
tggactcattcagctctcgttttcaatttaaaaatgtaatgaaccgacgaaccaaaccgataacttaataatgtgatgtcttttgcaaatatctgccagc |
27601805 |
T |
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| Q |
102 |
ctagtcccaacaaaacattacacca-tannnnnnnnactctcatttcttactccaagcaccagattagatacaccaatacactttggcatctca |
194 |
Q |
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| T |
27601806 |
ctagtcccaacaaaatattacaccattttattttttactctcatttcttactccaagcaccagattagatacaccaatacactttggcatctca |
27601899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 27601898 - 27601950
Alignment:
| Q |
232 |
caacgagagaaatgagtcacaaaattgtagtatgcatgcattgtaatgtgcaa |
284 |
Q |
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| T |
27601898 |
caacgagagaaatgagtcacaaaattgtagcatgcatgcattgtaatgtgcaa |
27601950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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