View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_110 (Length: 239)
Name: NF5717_low_110
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_110 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 13878913 - 13878786
Alignment:
| Q |
21 |
taaacaaatatatggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttctttttattcatgagctgagggctgag |
120 |
Q |
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| T |
13878913 |
taaaccaatatatggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttcactttattcatgagctgagggctgag |
13878814 |
T |
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| Q |
121 |
gcttttaatgtgtgaatgaatcagagta |
148 |
Q |
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| T |
13878813 |
gcttttaatgtgtgaatgaatcagagta |
13878786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 13874629 - 13874540
Alignment:
| Q |
151 |
tatttttccttaccactacaagtgattaatggcatcattt-cgttgttaattgtgtttacaggaccaagtgatcactacacttgtgaagt |
239 |
Q |
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| T |
13874629 |
tatttgtccttacaacgtcaagtgatcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttgtgaagt |
13874540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 13884566 - 13884499
Alignment:
| Q |
164 |
cactacaagtgattaatggcatcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttgt |
234 |
Q |
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| T |
13884566 |
cactgcaagtaattaatggcttcatttccttgttaattgtgtttatggg---aagtgatcactacacttgt |
13884499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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