View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_low_115 (Length: 238)
Name: NF5717_low_115
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_115 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36327704 - 36327483
Alignment:
| Q |
1 |
tattgccctcttttgaaatcccttaaatattgttcatggtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327704 |
tattgccctcttttgaaatcccttaaatattgttcatggtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtc |
36327605 |
T |
|
| Q |
101 |
tacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgatagctgccctcttcttgactctcttgacattagtgattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36327604 |
tacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgatagctgccctcttcttgagtctcttgacattagtgattg |
36327505 |
T |
|
| Q |
201 |
tcattatttgactgaagatttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36327504 |
tcattatttgactgaagatttg |
36327483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 36313415 - 36313241
Alignment:
| Q |
48 |
atcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtg |
147 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
36313415 |
atcttgtgactctgataaaacggcacttgttattgctgaaacaatgcctggtctacgccatcttgatatgaaaggacacaagctcactgaacttggtgtg |
36313316 |
T |
|
| Q |
148 |
cttgccattattgatagctgccctcttcttgactctcttgacattagtgattgtcattatttgactgaagatttg |
222 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
36313315 |
ctcgccattattgataaatgccctcttcttgagtctcttgacattcgtgattgtcattatttgaatgaaggtttg |
36313241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 36333483 - 36333308
Alignment:
| Q |
47 |
aatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgt |
146 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
36333483 |
aatcttgcgactctgataaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcactcaacttggtgt |
36333384 |
T |
|
| Q |
147 |
gcttgccattattgatagctgccctcttcttgactctcttgacattagtgattgtcattatttgactgaagatttg |
222 |
Q |
| |
|
||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
36333383 |
gctcgccattattgataaaggccctcttcttgagtctcttgacattcgtgattgtcattatttgaatgaagatttg |
36333308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 36336231 - 36336012
Alignment:
| Q |
3 |
ttgccctcttttgaaatcccttaaatattgttcatggtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtcta |
102 |
Q |
| |
|
||||||||||||||||| ||| | ||| |||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
36336231 |
ttgccctcttttgaaatggcttcagtataattcatgctcgcttgactcttgtgactctgataaaatggcgtttcttattgctgaaacaatgcctggtcta |
36336132 |
T |
|
| Q |
103 |
cgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgatagctgccctcttcttgactctcttgacattagtgattgtc |
202 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||| ||||| ||||||||||||| |||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
36336131 |
tgccatcttgatatgagaggacacaagctcactgaacttggcgtgctcgccattattgataaatgccctcttcttgaatatcttgacattagtttttgtc |
36336032 |
T |
|
| Q |
203 |
attatttgactgaagatttg |
222 |
Q |
| |
|
| |||||| |||||||||| |
|
|
| T |
36336031 |
ttaatttgaatgaagatttg |
36336012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 36320797 - 36320639
Alignment:
| Q |
64 |
aaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgata |
163 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||||||| |||||||||||||| |
|
|
| T |
36320797 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
36320698 |
T |
|
| Q |
164 |
gctgccctcttcttgactctcttgacattagtgattgtcattatttgactgaagatttg |
222 |
Q |
| |
|
|| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36320697 |
aatgtcctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttg |
36320639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 202
Target Start/End: Complemental strand, 36325788 - 36325639
Alignment:
| Q |
53 |
gtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgc |
152 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| ||||||| || |
|
|
| T |
36325788 |
gtgaatctgataaaatggcttttgttattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcagtgaacttcgtgtgctcgc |
36325689 |
T |
|
| Q |
153 |
cattattgatagctgccctcttcttgactctcttgacattagtgattgtc |
202 |
Q |
| |
|
||| ||||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
36325688 |
cataattgataaatgccctcttcttgaatctcttgacattagtgtttgtc |
36325639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 42563630 - 42563560
Alignment:
| Q |
67 |
atggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactga |
137 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||| ||||||||||| | || |||||| |||| ||||| |
|
|
| T |
42563630 |
atggcgtttgttatcgctgaaatgatgtctggtctgtgccatcttgatatcaatggacacaagcttactga |
42563560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University