View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_low_119 (Length: 237)

Name: NF5717_low_119
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_low_119
NF5717_low_119
[»] chr2 (3 HSPs)
chr2 (15-224)||(27363688-27363897)
chr2 (15-224)||(45400038-45400247)
chr2 (55-180)||(13031918-13032042)
[»] chr4 (2 HSPs)
chr4 (55-180)||(24630364-24630488)
chr4 (55-107)||(24665280-24665332)
[»] chr7 (1 HSPs)
chr7 (63-177)||(26841178-26841291)
[»] chr1 (4 HSPs)
chr1 (55-97)||(34521534-34521576)
chr1 (55-97)||(34534367-34534409)
chr1 (147-186)||(19329302-19329342)
chr1 (147-175)||(47646606-47646634)
[»] chr5 (1 HSPs)
chr5 (147-186)||(42729058-42729098)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 27363688 - 27363897
Alignment:
Q  15 aaaattgaaatatacccatgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27363688 aaaattgaaatatacccatgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgt 27363787  T
Q  115 tgatcgacttaaacatcacaccagttcttaaagagacgatacaaaaatacttacttttgatactacttcatgctgccatactcagatcccactttggaat 214  Q
    ||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27363788 tgatcaacttaaacatcacaccagtctttaaagagacgatacaaaaatacttacttttgatactacttcatgctgccatactcagatcccactttggaat 27363887  T
Q  215 cttgcttcct 224  Q
    ||||||||||    
T  27363888 cttgcttcct 27363897  T

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Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 45400247 - 45400038
Alignment:
Q  15 aaaattgaaatatacccatgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45400247 aaaattgaaatatacccatgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgt 45400148  T
Q  115 tgatcgacttaaacatcacaccagttcttaaagagacgatacaaaaatacttacttttgatactacttcatgctgccatactcagatcccactttggaat 214  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||    
T  45400147 tgatcgacttaaacatcacaccagtccttaaagagacgatacaaaaatacttacttttaatactaattaatgctgccatactaagatcccactttggaat 45400048  T
Q  215 cttgcttcct 224  Q
    ||||||||||    
T  45400047 cttgcttcct 45400038  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 13031918 - 13032042
Alignment:
Q  55 tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatcacaccagttcttaaagagacgat 154  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||| |||||| || |||||| ||| ||| | |  |||   |||||||    
T  13031918 tttatagcttatgaaaccaaacaccttacaattatatcattgaaaatcata-ttaattgttgaacggcttaaatatcgcactaatctttatgaagacgat 13032016  T
Q  155 acaaaaatacttacttttgatactac 180  Q
    |||||||||||||||| |||||||||    
T  13032017 acaaaaatacttacttatgatactac 13032042  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 24630364 - 24630488
Alignment:
Q  55 tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatcacaccagttcttaaagagacgat 154  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||||| ||||  || |||||| |||||| || ||||| | | | |||   |||| |||    
T  24630364 tttatagcttatgaaatcaaacaccttacaattttatcacttaaaattatata-aattgttgaacgactttaatatcacgctactccttgtggagatgat 24630462  T
Q  155 acaaaaatacttacttttgatactac 180  Q
    ||||||||| ||||||||||||||||    
T  24630463 acaaaaatatttacttttgatactac 24630488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 24665280 - 24665332
Alignment:
Q  55 tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatt 107  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  24665280 tttatagcttatgaaaccaaacaccttacaattttatcacttaaaatcatatt 24665332  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 26841178 - 26841291
Alignment:
Q  63 ttatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatcacaccagttcttaaagagacgatacaaaaat 162  Q
    |||||||| |||||||||||||||||| ||||||||||||||| | || ||||||  || ||||| ||| ||| ||| |||   || | |||||||||||    
T  26841178 ttatgaaatcaaacaccttacaattatctcacttaaaatcata-tcaattgttgaatgaattaaatatcgcactagtccttgtggatatgatacaaaaat 26841276  T
Q  163 acttacttttgatac 177  Q
    |||||||||||||||    
T  26841277 acttacttttgatac 26841291  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 34521534 - 34521576
Alignment:
Q  55 tttatagattatgaaaccaaacaccttacaattatatcactta 97  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  34521534 tttatagcttatgaaaccaaacaccttacaattttatcactta 34521576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 34534367 - 34534409
Alignment:
Q  55 tttatagattatgaaaccaaacaccttacaattatatcactta 97  Q
    ||||||| ||||||||||||||||||||||||| || ||||||    
T  34534367 tttatagcttatgaaaccaaacaccttacaattttaccactta 34534409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 19329342 - 19329302
Alignment:
Q  147 gagacgata-caaaaatacttacttttgatactacttcatg 186  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  19329342 gagacgatagcaaaaatacttacttttgatactacatcatg 19329302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 47646634 - 47646606
Alignment:
Q  147 gagacgatacaaaaatacttacttttgat 175  Q
    |||||||||||||||||||||||||||||    
T  47646634 gagacgatacaaaaatacttacttttgat 47646606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 42729098 - 42729058
Alignment:
Q  147 gagacgata-caaaaatacttacttttgatactacttcatg 186  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  42729098 gagacgataacaaaaatacttacttttgatactacatcatg 42729058  T

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