View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_123 (Length: 228)
Name: NF5717_low_123
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_123 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 33768867 - 33769087
Alignment:
| Q |
4 |
ctctaagtgacataactttgcccgatccaaaaattaaaatgaacattaattacctggatacttgcggtatttcttctggatcgggaggattgggacttac |
103 |
Q |
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| T |
33768867 |
ctctaagtgacataactttgcacgatacaaaaaataaaacgaacatta----cctgcatacttgcggtatttcttctggatcgggaggattgggacttac |
33768962 |
T |
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| Q |
104 |
aaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaaggctaccattagagaaatatcgaactttcttacttgtatcccttgtataaaat |
203 |
Q |
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| T |
33768963 |
aaaaaatgaaagtgagtccctccagttggcagcagggtccgtaaaaaggctaccattagagaaatatcgaactttcttacttttatcccttgtataaaat |
33769062 |
T |
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| Q |
204 |
ggtttccttgcatcagcatcttgtt |
228 |
Q |
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| T |
33769063 |
ggtttccttgcatcagcatcttgtt |
33769087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 33764052 - 33764227
Alignment:
| Q |
53 |
ttacctggatacttgcggtatttcttctggatcgggaggattgggacttacaaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaagg |
152 |
Q |
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| T |
33764052 |
ttacctgcatacttgtggtatttcttctggattaggaggatcaggactagtaaaaaatgcaattgtgtccctccagttagcagcagggtccctaaaaagg |
33764151 |
T |
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| Q |
153 |
ctaccattagagaaatatcgaactttcttacttgtatcccttgtataaaatggtttccttgcatcagcatcttgtt |
228 |
Q |
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| T |
33764152 |
gtaccattagaaaaatatctgactttcttacttgtatcccttgtataaaatggtttccttgcatcaacttcttgtt |
33764227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 52 - 212
Target Start/End: Original strand, 33772193 - 33772353
Alignment:
| Q |
52 |
attacctggatacttgcggtatttcttctggatcgggaggattgggacttacaaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaag |
151 |
Q |
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| T |
33772193 |
attacctgcatacttgaggtatttcttctggattaggaggatcaggacttacataaaaagaaattgtgtccctccagttagcagcatggttcttaaaaag |
33772292 |
T |
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| Q |
152 |
gctaccattagagaaatatcgaactttcttacttgtatcccttgtataaaatggtttcctt |
212 |
Q |
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| T |
33772293 |
gcttccattggagaaatatctaactttcttacttgtatcccttgtatagaatggtttcctt |
33772353 |
T |
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