View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_124 (Length: 228)
Name: NF5717_low_124
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_124 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 3491906 - 3492129
Alignment:
| Q |
7 |
tcaacatagtgtcttgagttttaacattaaacnnnnnnn-tgatggaaaatagtatcttttattatttgtaaacaaagtaacaagtaccaccttaatctc |
105 |
Q |
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| T |
3491906 |
tcaacatagtgtattgagttttaacattaaacaaaaaaaatgatggaaaatagtatcttttattatttgtaaacaaagtaacaagtaccaccttaatctc |
3492005 |
T |
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| Q |
106 |
acacaaacaatagtatttctgtgtctatttagggatagtcacacatacattttctttcaaaaagaaaagattgtcatgcatacc-taatacctaaaaatc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3492006 |
acacaaacaatagtatttctgtgtctatttagggatagtcacacatacattttctttcaaaaagaaaagattgtcatgcataccttaatacctaaaaatc |
3492105 |
T |
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| Q |
205 |
aaagagcaaactctgtggccaatt |
228 |
Q |
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|||||||||||||| ||||||||| |
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| T |
3492106 |
aaagagcaaactctctggccaatt |
3492129 |
T |
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