View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_13 (Length: 560)
Name: NF5717_low_13
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 21 - 544
Target Start/End: Complemental strand, 12753461 - 12752940
Alignment:
| Q |
21 |
gacacagacacgatcacaccgctaataatttnnnnnnnntcacataatttagtataatcatatatacgtgtcgatgtcatgtcgatgttgaacattaacg |
120 |
Q |
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| T |
12753461 |
gacacatacacgatcacaccgctaataatttgagaaaaatcaca--atttaatataatcatatatatgtgtcggtgtcatgtcgatgtcgaacattaatg |
12753364 |
T |
|
| Q |
121 |
cgtgtccgacaccaaaacacgtttaatccaaggactatgtgcacttcatagatccaaagaaactaacataatcacatgtt-actattattttcctataag |
219 |
Q |
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||||||||||||| |||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
12753363 |
cgtgtccgacaccgaaacacatttaatccgaggagtatatgcacttcatagatccaaagaaactaacataatcacgtctttactattattttcctataag |
12753264 |
T |
|
| Q |
220 |
agaaagtgatcgaacgggtaaccaacccaccaactttgccacacatgttggtataattattccatttttgtaagatatatataatataatcctaaaaaat |
319 |
Q |
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| T |
12753263 |
agaaagtgatcgaaccggtaaccaacccaccaactttgccacacatgttggtataatcattccatttttgtaa-agatatataatataatcctaaaaaat |
12753165 |
T |
|
| Q |
320 |
aggttgtatatttaccatgattgtaacgattgtgctataacaataattggatgatcatgcatatagtggtccattaagatcttatatgtcaatggtgttt |
419 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12753164 |
aggttgtatatttatcatgattgtaacgtttgtgctataacaataattggatgatcatgcatatagtggtccattaagatcttatatgtcaatggtgttc |
12753065 |
T |
|
| Q |
420 |
tcatatgatgtgaccataagaaggttaaaatcagttggctaagacaatgacaattgaccatctcgtagaagaaaaatgcaaccatcttaggtcttacaag |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12753064 |
tcatatgatgtgaccataagaaggttaaaatcagttggctaagacaatgacaattgaccatctcgtagaagaaaaatgcaaccatattaggtcttacaag |
12752965 |
T |
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| Q |
520 |
atatccactaaggtccattcaaaat |
544 |
Q |
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| T |
12752964 |
atatccactaaggtccattcaaaat |
12752940 |
T |
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