View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_low_132 (Length: 202)

Name: NF5717_low_132
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_low_132
NF5717_low_132
[»] chr3 (1 HSPs)
chr3 (10-185)||(37463037-37463212)
[»] chr2 (15 HSPs)
chr2 (14-147)||(9357723-9357856)
chr2 (14-164)||(9275064-9275214)
chr2 (21-151)||(9316578-9316708)
chr2 (14-147)||(10353664-10353797)
chr2 (21-164)||(9329149-9329292)
chr2 (14-159)||(9283632-9283777)
chr2 (14-147)||(10348325-10348458)
chr2 (14-152)||(9292471-9292609)
chr2 (34-158)||(7115095-7115219)
chr2 (14-147)||(8572959-8573092)
chr2 (21-154)||(9321526-9321659)
chr2 (14-155)||(10372404-10372545)
chr2 (14-148)||(10336378-10336512)
chr2 (23-74)||(11987017-11987068)
chr2 (12-71)||(12005657-12005716)
[»] scaffold0667 (1 HSPs)
scaffold0667 (14-148)||(5020-5154)
[»] chr4 (1 HSPs)
chr4 (14-147)||(26575416-26575549)
[»] chr8 (1 HSPs)
chr8 (12-139)||(41966185-41966312)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 37463037 - 37463212
Alignment:
Q  10 gcatagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37463037 gcatagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccatt 37463136  T
Q  110 ggagatagcgaggaggccgttacatgaaccgataagagccatggtgctgtcacgccgtgtgtaaggatcgatgttg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37463137 ggagatagcgaggaggccgttacatgaaccgataagagccatggtgctgtcacgccgtgtgtaaggatcgatgttg 37463212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 9357723 - 9357856
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    |||||| |||||||||||  ||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  9357723 agggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggag 9357822  T
Q  114 atagcgaggaggccgttacatgaaccgataagag 147  Q
    || |||||||||||||||||||||||||||||||    
T  9357823 atggcgaggaggccgttacatgaaccgataagag 9357856  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 9275064 - 9275214
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||||| ||||| || ||  ||| ||||||| |||| ||| ||||||||||||||    
T  9275064 agggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctgaaggcggtttggccattggag 9275163  T
Q  114 atagcgaggaggccgttacatgaaccgataagagccatggtgctgtcacgc 164  Q
    ||||| | |||||||||||||||||| ||||||||||||||||||| ||||    
T  9275164 atagcaatgaggccgttacatgaacctataagagccatggtgctgttacgc 9275214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 9316578 - 9316708
Alignment:
Q  21 aaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggagatagcga 120  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||| || ||||    
T  9316578 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgatttgaccattggaaatggcga 9316677  T
Q  121 ggaggccgttacatgaaccgataagagccat 151  Q
    | ||||||||||||||||||| |||||||||    
T  9316678 gaaggccgttacatgaaccgagaagagccat 9316708  T

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Target: chr2; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 10353664 - 10353797
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||||||||||||||| |||| ||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||  ||| | |||     
T  10353664 agggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctattacgccgtgggac 10353763  T
Q  114 atagcgaggaggccgttacatgaaccgataagag 147  Q
    || |||||||||||||||||||||||||||||||    
T  10353764 atggcgaggaggccgttacatgaaccgataagag 10353797  T

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Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 9329149 - 9329292
Alignment:
Q  21 aaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggagatagcga 120  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||| | ||||||| | | | |||||||||||||||| ||||||||| |    
T  9329149 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgatttggccataggagatagcaa 9329248  T
Q  121 ggaggccgttacatgaaccgataagagccatggtgctgtcacgc 164  Q
     ||||||||| ||||||||||||||| ||||| |||||| ||||    
T  9329249 tgaggccgttgcatgaaccgataagacccatgttgctgttacgc 9329292  T

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Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 9283777 - 9283632
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    |||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||  | ||| |||| |||||||| ||||| ||| |||||||| ||    
T  9283777 agggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagcaattgggccattgtag 9283678  T
Q  114 atagcgaggaggccgttacatgaaccgataagagccatggtgctgt 159  Q
    || ||||||||||||||||||||||| ||||||||| || ||||||    
T  9283677 atggcgaggaggccgttacatgaaccaataagagccttgatgctgt 9283632  T

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Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 10348325 - 10348458
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||  |  |||||||||||||||| |||||   ||  |||||    
T  10348325 agggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattacccctgtggag 10348424  T
Q  114 atagcgaggaggccgttacatgaaccgataagag 147  Q
    || |||||||||||||||||||||||||||||||    
T  10348425 atggcgaggaggccgttacatgaaccgataagag 10348458  T

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Target: chr2; HSP #8
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 9292471 - 9292609
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||||||||||||||| |||||||| | |||||||||||| ||| |||||||||||| | ||||| ||||||||||||   |||||||| ||||||     
T  9292471 agggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 9292570  T
Q  114 atagcgaggaggccgttacatgaaccgataagagccatg 152  Q
    || ||||||||||||||||||||||| ||||||| ||||    
T  9292571 atggcgaggaggccgttacatgaaccaataagaggcatg 9292609  T

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Target: chr2; HSP #9
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 7115219 - 7115095
Alignment:
Q  34 gatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggagatagcgaggaggccgttaca 133  Q
    |||||||||| ||||||| ||||||||||||||||||  | |||   ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||    
T  7115219 gatgtttacgggtgttagtgttccagattgtgatttcagttgcgtgattaggatacgtaaaagcgatttggccattggagatggcgaggaggccgttaca 7115120  T
Q  134 tgaaccgataagagccatggtgctg 158  Q
    ||||||||||||| |||||| ||||    
T  7115119 tgaaccgataagatccatggagctg 7115095  T

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Target: chr2; HSP #10
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 8573092 - 8572959
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||| ||||||| | ||||| || || |||||||||   ||||| ||     
T  8573092 agggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaaccattagaa 8572993  T
Q  114 atagcgaggaggccgttacatgaaccgataagag 147  Q
    || |||||||||||||||||||||||||||||||    
T  8572992 atggcgaggaggccgttacatgaaccgataagag 8572959  T

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Target: chr2; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 9321526 - 9321659
Alignment:
Q  21 aaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggagatagcga 120  Q
    |||||||| ||  |||| ||||| ||| ||||||||||||||||||||||||||| |  |||||||||  ||||||| | |||||| | |||||| ||||    
T  9321526 aaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggccgtgggagatggcga 9321625  T
Q  121 ggaggccgttacatgaaccgataagagccatggt 154  Q
    ||||||||||||| ||||||||||||||||||||    
T  9321626 ggaggccgttacaggaaccgataagagccatggt 9321659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 10372404 - 10372545
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||||||||||||| |  ||||||||| |||||||||||||||| ||||||||| |||| | |   ||| |   ||||||||| || ||| ||| ||    
T  10372404 agggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagcgaatttgccgttgcag 10372503  T
Q  114 atagcgaggaggccgttacatgaaccgataagagccatggtg 155  Q
    || ||||||||||||||||||||||||||| ||| |||||||    
T  10372504 atggcgaggaggccgttacatgaaccgatacgagtcatggtg 10372545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 10336378 - 10336512
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||| ||||||||||| ||||||||||  || |||| || |||| || |||||| ||||||| || ||| |  ||||||||||||| ||||||||||    
T  10336378 agggagataagggataatccgatgtttacggatggtaggattacagaatgcgatttcattggcggagtaagggttagtgaaagcgatttcgccattggag 10336477  T
Q  114 atagcgaggaggccgttacatgaaccgataagagc 148  Q
    || ||||||||||| || |||||||| | ||||||    
T  10336478 atggcgaggaggccattgcatgaaccaagaagagc 10336512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 11987068 - 11987017
Alignment:
Q  23 agggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttg 74  Q
    |||||||||| |||||||||| ||||||||||||||||  | ||||||||||    
T  11987068 agggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttg 11987017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 12005716 - 12005657
Alignment:
Q  12 atagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcg 71  Q
    |||||||||  |||||||||| ||||||||||  |||||||||||||||  |||||||||    
T  12005716 atagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcg 12005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 5020 - 5154
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||| ||| |||||     
T  5020 agggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagcgatttcgccgttggaa 5119  T
Q  114 atagcgaggaggccgttacatgaaccgataagagc 148  Q
    |  ||||||||||||||||||||||||||||||||    
T  5120 acggcgaggaggccgttacatgaaccgataagagc 5154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 26575416 - 26575549
Alignment:
Q  14 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 113  Q
    ||||||||||||||||||| ||| |||||  |||| |||||||||||||| ||||||||||| |||||| |||||||||||||| |||  ||| | |||     
T  26575416 agggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccattacgccgtgggac 26575515  T
Q  114 atagcgaggaggccgttacatgaaccgataagag 147  Q
    || |||||||||||||||||||||||||||||||    
T  26575516 atggcgaggaggccgttacatgaaccgataagag 26575549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 41966312 - 41966185
Alignment:
Q  12 atagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattgg 111  Q
    ||||||||||||||||||||| |||||||||   ||||||||||||||| ||||||||| ||   | ||| ||| |  | |||| |||||| ||||||||    
T  41966312 atagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattgg 41966213  T
Q  112 agatagcgaggaggccgttacatgaacc 139  Q
    ||||   |||||||||||||||||||||    
T  41966212 agatgcagaggaggccgttacatgaacc 41966185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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