View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_14 (Length: 550)
Name: NF5717_low_14
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 11 - 533
Target Start/End: Complemental strand, 52409332 - 52408806
Alignment:
| Q |
11 |
cacagagtaacatcataagaacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccatt |
110 |
Q |
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| T |
52409332 |
cacagagtaacatcataagaacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccatt |
52409233 |
T |
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| Q |
111 |
gccaacttcatcacactcgcatcataatcaaactgatcttatactcagcaatcgcaatagcactgattatgatgcttccaaagtacaagtacaagtcaaa |
210 |
Q |
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| T |
52409232 |
gccaacttcatcacactcgcatcataatcaaactgatcttatactcagcaatcgcaatagcactgattatgatgcttccaaagtacaagtacaagtcaaa |
52409133 |
T |
|
| Q |
211 |
caaatgtcaaattcacaattacttgagcttagtgaaacaacaccaaaatcaaacggtaagaatatatagtatcagttcacaaatactagtaaatatgtca |
310 |
Q |
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| T |
52409132 |
caaatgtcaaattcacaattacttgagcttagtgaaacaacaccaaaatcaaacggtaagaatatgtagtatcagttcacaaatactagtaaatatgtca |
52409033 |
T |
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| Q |
311 |
aatttgtccatacaatgagtctgaattgatatggaccgattggcgtcaattgttcagcaaacatatagtatattttaaagtaaatttaaaaaagagaaaa |
410 |
Q |
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| T |
52409032 |
aatttgtccatacaatgagtctgaattgatatggaccgattggcgtcaattgttcagcaaacatatagtatcttttaaagtaaatttaaaaaagagaaaa |
52408933 |
T |
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| Q |
411 |
tca----gggaatatagttacttagcaatgtaatcccattgccaattagtagtttttgaaattttgtgtatgtatataactatgaataaataacagtata |
506 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52408932 |
tcagggagggaatatagttacttagcaatgtaatcccattgccaattagtagtttttgaaattttgtgtatgtatataactatgaataaataacagtata |
52408833 |
T |
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| Q |
507 |
cataatagcatgatggtagtctttctt |
533 |
Q |
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| T |
52408832 |
cataatagcatgatgatagtctttctt |
52408806 |
T |
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