View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_16 (Length: 533)
Name: NF5717_low_16
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 126 - 517
Target Start/End: Complemental strand, 11769852 - 11769460
Alignment:
| Q |
126 |
ccttcacaatcctaaaaaacaattaataattcaaattctctttctctaaactctcatcgtaacttagaacaactaaacgaattatcaattttcacagcaa |
225 |
Q |
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| T |
11769852 |
ccttcacaatcctaaaaaacaattaacaattcaaattctctttctctaaactctcatcgtaacttagaacaactaaacaaattctcaattttcacagcaa |
11769753 |
T |
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| Q |
226 |
atacagaattgaaatctaagagcaaattaacaacaacgctatcaactatcacatatcattgaataatcgaattaagcagcaaaattttcgaaattgataa |
325 |
Q |
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| T |
11769752 |
atacagaattgaaatctaagagcaaattaacaacaacgctatcaactatgacatatcattgaataatcgaattaagcagcaaaattttcgaaattgataa |
11769653 |
T |
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| Q |
326 |
aaacgaaac-aaaacagaaattaggttttaagcaaacaaattcatgaagacgaaagtgctgaaacaaaagcaaaatcggatctagaaattggaagtgaag |
424 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11769652 |
aaacgaaacaaaaatcgaaattaggttttaagcaaacaaattcatgaagacgaaagtgctgaaacaaaagcaaaatcggatctagaaattggaagtgaag |
11769553 |
T |
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| Q |
425 |
aagagaaaactaaacggacagtagaagtaaacaatgcaggtgaaactggaatcagaaattgatcggaaaagcaccgtgcacggcagcgagaac |
517 |
Q |
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| T |
11769552 |
aagagaaaactaaccggacagtagaagtaaacaatgcaggtgaaaccggaatcggaaattgatcggagaagcaccgtgcacggcagcgagaac |
11769460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 12706347 - 12706263
Alignment:
| Q |
251 |
attaacaacaacgctatcaactatcacatatcattgaataatcgaattaagcagcaaaattttcgaaattgataaaaacgaaaca |
335 |
Q |
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| T |
12706347 |
attaacaacaacgctatcaactatcacatgtctatgaataatcgatttcagcagaaaaaccttcaaattcaataaaaacgaaaca |
12706263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 12706199 - 12706165
Alignment:
| Q |
403 |
gatctagaaattggaagtgaagaagagaaaactaa |
437 |
Q |
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| T |
12706199 |
gatctagaaattggaagtgaagtagagaaaactaa |
12706165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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