View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_19 (Length: 509)
Name: NF5717_low_19
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 242 - 350
Target Start/End: Original strand, 28942317 - 28942425
Alignment:
| Q |
242 |
ttcttccaataacaatggcagagacgtaagtaaaatcagaatcatcatctggttcatctccacatccggttgtaattgaggtaccatcaaacaacgtcgt |
341 |
Q |
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| T |
28942317 |
ttcttccaataacaatggcagagacacaagtaaaatcagaatcatcatctggttcatctccacatctggttgtaattgaggtatcatcaaacaacgtcgt |
28942416 |
T |
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| Q |
342 |
accgaataa |
350 |
Q |
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| T |
28942417 |
accgaataa |
28942425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 28940795 - 28940874
Alignment:
| Q |
12 |
atgaaactatcaatgtgtttggaatcacggtcattataaaactataaccagaagcttcatattagcatgttgcatgtcgc |
91 |
Q |
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| T |
28940795 |
atgaaactatcaatgtgtttggaatcacggtcattataaaactataaccagaagcttcatattagcatgttgcatgtcgc |
28940874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 28940884 - 28940931
Alignment:
| Q |
86 |
tgtcgctggatctagcattttccaggttttattgataagtctgaatta |
133 |
Q |
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| T |
28940884 |
tgtcgctggttctagcattttccaagttttattgataagtctgaatta |
28940931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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