View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_2 (Length: 750)
Name: NF5717_low_2
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 23 - 691
Target Start/End: Complemental strand, 10075950 - 10075276
Alignment:
| Q |
23 |
aagagactgaggtaatctaaccttgatatatatgttgtgattttaatgatcacatatacaaaattaaggtttaagagacacacgatgatcgtctca---- |
118 |
Q |
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| T |
10075950 |
aagagactggggtaatctagccttggtatatatattgtaatgttaatgatcacagatacaaaagtagggtttaagagacatgcaatgatcgtctcaactc |
10075851 |
T |
|
| Q |
119 |
-tattttgagacgattatga-taacatatcatttagggtttgagaaacatgcgatcggagagcaagtattagaggattgactatcctcatcgttatttag |
216 |
Q |
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| T |
10075850 |
atattttgagacgattatgaataacgtatcatttagagtttgagagacatgtgatcagagagcaagtgtgagaggattgactatcgtcatcgtcatttag |
10075751 |
T |
|
| Q |
217 |
tgtatccatactctaattgtctaatgagacaacaattaaataattaaacggttgtggacagagacccttcattatgataattgacaaaataattcaactc |
316 |
Q |
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| T |
10075750 |
tgtatccatactctaaccgtctaatgtgacaacggttaaatagttaaacggttgtaggcagagatccttcaattggctaattgacaaaataattcaactc |
10075651 |
T |
|
| Q |
317 |
atcattgtccattcaaaaacatagctcaatcaaataattcatcggttactagtaagtacttaataacaatatactctaaccctacgcacaaaacaaaaaa |
416 |
Q |
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| T |
10075650 |
atcatggtccattcaaaaacatagctcaatcaaataattcatcggttactagtacgtacttaataacaatatactctaaccctacgcacaaaacaaaaaa |
10075551 |
T |
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| Q |
417 |
tatattgaacctatttttatcaaaactgttctaattctaattgcttggtttttgaaggggtttgatgcatcagtattgttaaaggacacaccaactttca |
516 |
Q |
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| T |
10075550 |
tatattgaaactatttttatcaaaactgttctaattctaattgcttgatttttgaaggggtgtgatgcatcagtattgttaaaggacacaccaactttca |
10075451 |
T |
|
| Q |
517 |
agggagaacaaaatgccagacccaatgccaattctctgaggggttacgaaatcatagaaagtgtaaaagctcaattagagctactctgtcccaatgttgt |
616 |
Q |
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| T |
10075450 |
agggagaacaaaatgccagacccaatgccaattctctgaggggttacgaaatcatagaaagtgtaaaagctcaattagagctactctgtcccaatgttgt |
10075351 |
T |
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| Q |
617 |
ttcatgtgcagatatattaacacttgcagctagagattctgttgttgctgtaagtattcttcttgaaatagtttt |
691 |
Q |
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| T |
10075350 |
ttcatgtgcagatatattagcacttgcagctagagattctgttgttgctgtaagtattcttcttgaaatagtttt |
10075276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 457 - 677
Target Start/End: Complemental strand, 10084286 - 10084066
Alignment:
| Q |
457 |
ttgcttggtttttgaaggggtttgatgcatcagtattgttaaaggacacaccaactttcaagggagaacaaaatgccagacccaatgccaattctctgag |
556 |
Q |
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| T |
10084286 |
ttgcttgatttttgaaggggtgtgatgcatcagtattgttgaaagacacaccaactttccagggagaacaaaatgcaagacccaatgccaattctctcag |
10084187 |
T |
|
| Q |
557 |
gggttacgaaatcatagaaagtgtaaaagctcaattagagctactctgtcccaatgttgtttcatgtgcagatatattaacacttgcagctagagattct |
656 |
Q |
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| T |
10084186 |
gggtttcgaattcatagacagtttaaaagctaaaatagaagcagtgtgtcccaatgttgtttcttgtgcagatatcttagcagttgcagccagagattct |
10084087 |
T |
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| Q |
657 |
gttgttgctgtaagtattctt |
677 |
Q |
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|||| | |||||||||||||| |
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| T |
10084086 |
gttgctactgtaagtattctt |
10084066 |
T |
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