View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_21 (Length: 494)
Name: NF5717_low_21
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 33417133 - 33416674
Alignment:
| Q |
18 |
cacagatagtccacgtggttaaataaaaacaaaagaaaactcnnnnnnn-gttcaagtgataatataattagttgtggaaattcaacctcgtcttagtaa |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33417133 |
cacagatagtccacgtggttaaataaaaacaaaagaatatttttttttttgttcaagtaataatataattagttgtggaaattcaacctcgtcttagtaa |
33417034 |
T |
|
| Q |
117 |
aagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaaaaaatctatatacacacatctatataagaattgcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
33417033 |
aagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgtcgataaaatctatatacacacatctatataagaattgcac |
33416934 |
T |
|
| Q |
217 |
aattcatcaaaatcaaaacaaataacatttgcgcagcatttgctagctagctattcttttgattgagattttatattctagggag-nnnnnnnntcttga |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33416933 |
aattcatcaaaatcaaaacaaat---atttgcgcagcatttgctagctagctattcttttgattgagattttatattctagggagaaaaaaaaatcttga |
33416837 |
T |
|
| Q |
316 |
cactcannnnnnngaagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttc |
415 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416836 |
cactcattttttt-aagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttc |
33416738 |
T |
|
| Q |
416 |
catttccatggttttactttcatcagttgcaat---tgcaactgatcacattgttggtgatgac |
476 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
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| T |
33416737 |
catttccatggttttactttcatcagttgcaattgctgcaactgattatattgttggtgatgac |
33416674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 330 - 476
Target Start/End: Complemental strand, 33424891 - 33424745
Alignment:
| Q |
330 |
aagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttt |
429 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424891 |
aagttaatttctacatttagagagaaatattttccaaaatcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttt |
33424792 |
T |
|
| Q |
430 |
tactttcatcagttgcaattgcaactgatcacattgttggtgatgac |
476 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33424791 |
tactttcatcagttgcaattgcaactgatcacattgttggtgatgac |
33424745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 350 - 476
Target Start/End: Complemental strand, 33410956 - 33410830
Alignment:
| Q |
350 |
agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaatt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33410956 |
agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttctatttccatggttttactttcatcagttgcaatt |
33410857 |
T |
|
| Q |
450 |
gcaactgatcacattgttggtgatgac |
476 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
33410856 |
gcaactgatcacattgttggtgatgac |
33410830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 33411224 - 33411108
Alignment:
| Q |
81 |
ataattagttgtggaaattcaacctcgtcttagtaaaagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaa |
180 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||| ||||||||||| ||| || |
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|
| T |
33411224 |
ataataagttgtggaaattcaacctcgtcttagtaaa-gccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgttgtgacgat |
33411126 |
T |
|
| Q |
181 |
aaaatctatatacacaca |
198 |
Q |
| |
|
|||||| ||| ||||||| |
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|
| T |
33411125 |
aaaatcaatacacacaca |
33411108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 33425145 - 33425054
Alignment:
| Q |
81 |
ataattagttgtggaaattcaacctcgtcttagtaaaa-gccgaccaaatccggtagccgaatataatagcatacatatactctattattgt |
171 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||| ||||||||||| |
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|
| T |
33425145 |
ataataagttgtggaaattcaacctcgtcttagtaaaaagccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgt |
33425054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 33427441 - 33427508
Alignment:
| Q |
217 |
aattcatcaaaatcaaaacaaataacatttgcgcagcatttgctagctagctattcttttgattgagatt |
286 |
Q |
| |
|
||||||||||| ||||||||| |||||||| || ||||||||||||||||| |||||||| ||||||||| |
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|
| T |
33427441 |
aattcatcaaa-tcaaaacaa-taacattttcgaagcatttgctagctagcaattcttttcattgagatt |
33427508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 33436903 - 33436844
Alignment:
| Q |
417 |
atttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgac |
476 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| ||| | ||||||||||||||||||||| |
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|
| T |
33436903 |
atttcaatggttttgctttcttcagttgcaatggcagccgatcacattgttggtgatgac |
33436844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 457
Target Start/End: Original strand, 33427563 - 33427669
Alignment:
| Q |
349 |
gagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaat |
448 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||| |||||||||| | |||||||| | ||||| ||||||||| |||| ||||||||||| |
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|
| T |
33427563 |
gagagaaatatatttcaaacctaaattttgatcaaatgg--gcttctcgtgtgttcttgatcctagctatttcaatggttttattttcctcagttgcaat |
33427660 |
T |
|
| Q |
449 |
tgcaactga |
457 |
Q |
| |
|
|| ||||| |
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|
| T |
33427661 |
ggctactga |
33427669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 33425259 - 33425227
Alignment:
| Q |
26 |
gtccacgtggttaaataaaaacaaaagaaaact |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
33425259 |
gtccacgtggttaaataaaaacaaaagaaaact |
33425227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 33411525 - 33411493
Alignment:
| Q |
26 |
gtccacgtggttaaataaaaacaaaagaaaact |
58 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
33411525 |
gtccacgtggttaaataaaaacaaatgaaaact |
33411493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 475
Target Start/End: Original strand, 24984670 - 24984775
Alignment:
| Q |
367 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt |
466 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| |||| |
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|
| T |
24984670 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt |
24984766 |
T |
|
| Q |
467 |
tggtgatga |
475 |
Q |
| |
|
|||||||| |
|
|
| T |
24984767 |
gggtgatga |
24984775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 475
Target Start/End: Original strand, 24990500 - 24990605
Alignment:
| Q |
367 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt |
466 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| |||| |
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|
| T |
24990500 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt |
24990596 |
T |
|
| Q |
467 |
tggtgatga |
475 |
Q |
| |
|
|||||||| |
|
|
| T |
24990597 |
gggtgatga |
24990605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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