View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_23 (Length: 480)
Name: NF5717_low_23
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 101 - 478
Target Start/End: Complemental strand, 32110759 - 32110382
Alignment:
| Q |
101 |
tttattagctgagttaggagttatcattatttggtgaaagttgtgaattgtgactgcacgtttggtttgaattggaaaaacaaacaaggatgagtgaaag |
200 |
Q |
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| T |
32110759 |
tttattagctgagttaggagttatcattatttggtgaaagttgtgaattgtgaatgcacgtttggtttgaattggaaaaacgaacaaggatgagtgaaaa |
32110660 |
T |
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| Q |
201 |
cacaaaatcaaaagatacctttgaagttttgattcaattatttggctggttaacataatcactctgaatttgaatcaaagtgnnnnnnnnnnncttcctt |
300 |
Q |
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| T |
32110659 |
cacaaaatcaaaagatacctttgaagttttgattcaattatttggctggttaacataatcactctgaatttgaatcaaagtgtttttttttttcttcctt |
32110560 |
T |
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| Q |
301 |
attctcctaacagcaaacgctagcacaagcctactcaaatgctcaaaaccaatctgaacatcaattttctgtatcagtagtgcctaccactacctcattg |
400 |
Q |
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| T |
32110559 |
attctcctaacagcaaacgctagcacaagcctactcaaatgctcaaaaccaatctgaacatcaattttctgtatcagtagtgcctaccactacctcattg |
32110460 |
T |
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| Q |
401 |
acacaagttccagcaataacattcaacaacattgcacaacaactgataccgaactctgttgagtattcatctcactcg |
478 |
Q |
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| T |
32110459 |
acacaagttcctgcaataacattcaacaacattgcacaacaactgataccgaactctgttgagtattcttctaactcg |
32110382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 32110814 - 32110757
Alignment:
| Q |
16 |
caagtttcattttggagtctaaatgatcaaatgctttctggttactagtgtatacttt |
73 |
Q |
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| T |
32110814 |
caagtttcattttggagtctaaatgatcaaatgctttctggttactagtatatacttt |
32110757 |
T |
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