View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_low_25 (Length: 452)
Name: NF5717_low_25
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 41901889 - 41901461
Alignment:
| Q |
16 |
aattgcttattatgaaccttaacggatttcttctccatagagctcatgtttgtgataagaaagcaattccaaagtctcgaactgctgattacaaatatcg |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41901889 |
aattgctaattatgaaccttaacggatttcttctccatagagctcatgtttgtgataagaaagcaattccaaagtctcgaactgctgattacaaatatcc |
41901790 |
T |
|
| Q |
116 |
ttactttctacgtaatattttctcaactcaacatacactttatatttctttttattatctgctttatataatacttgaatgaattttaattaatgactat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41901789 |
ttactttctacgtaatattttctcaactcaacatacactttatatttctttttattatatgctttatataatacttgaatgaattttaattaatgactat |
41901690 |
T |
|
| Q |
216 |
taattagtcgtaaatttggtgcagcttttaagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgc |
315 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41901689 |
taattagtcggaaatttggtgcagtttttaagaggccatttagcgaagaatttattaaattctgcttggaaagatttgaagtgggactctggtcttctgc |
41901590 |
T |
|
| Q |
316 |
aatggagtcagtaacgctgatcttctatttcatttcttcccttttttcctctttaaatttgattaattacttgatcttaaactgtatcctttttattgta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41901589 |
aatggagtcagtaacgctgatcttctatttcatttcttcccttttttcctctttaaatttgattaattacttgatcttaaactgtatcctttttattgta |
41901490 |
T |
|
| Q |
416 |
attgataattaggcataatattgatgatg |
444 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
41901489 |
attaataattaggcataatattgatgatg |
41901461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 41893672 - 41893556
Alignment:
| Q |
16 |
aattgcttattatgaaccttaacggatttcttctccatagagctcatgtttgtgataagaaagcaattccaaagtctcgaactgctgattacaaatatcg |
115 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
41893672 |
aattgctcattatgaacattaatggatttcttctccacagagctcatattagtgataagaaagcaattccaaagtctcgaactgctgatcacgaatatcg |
41893573 |
T |
|
| Q |
116 |
ttactttctacgtaata |
132 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
41893572 |
ttactttctccgtaata |
41893556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 41896848 - 41896732
Alignment:
| Q |
16 |
aattgcttattatgaaccttaacggatttcttctccatagagctcatgtttgtgataagaaagcaattccaaagtctcgaactgctgattacaaatatcg |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
41896848 |
aattgcttattatgaaccttaatggatttcttctccatagagctcgtgtcactgacaagaaagcaattccaaagtctcggaccgctgattacaaatatcg |
41896749 |
T |
|
| Q |
116 |
ttactttctacgtaata |
132 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
41896748 |
ttactttctccgtaata |
41896732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 41896627 - 41896542
Alignment:
| Q |
245 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaac |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
41896627 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaac |
41896542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 41829067 - 41829151
Alignment:
| Q |
245 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa |
329 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||||||||||||| || | ||| ||||||||| | ||||||||| |
|
|
| T |
41829067 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa |
41829151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 41885645 - 41885561
Alignment:
| Q |
245 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa |
329 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||||||||||||| || | ||| ||||||||| | ||||||||| |
|
|
| T |
41885645 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa |
41885561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 41891889 - 41891821
Alignment:
| Q |
245 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttct |
313 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
41891889 |
aagagaccatttactgaagaatttatgaaattctgcttagaaagatttgaagtgggcctctggtcttct |
41891821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 34453750 - 34453802
Alignment:
| Q |
245 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagt |
297 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
34453750 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagt |
34453802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University