View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_low_27 (Length: 438)
Name: NF5717_low_27
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 50 - 428
Target Start/End: Original strand, 32943995 - 32944361
Alignment:
| Q |
50 |
attcttttcaaaatcttaacactcaatatattagaagttacggctttaagtgaagtaggcacttcgtagtcatggtataattcactgttcgcaatcgtgg |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32943995 |
attcttttcaaaatcttaacactcaatatattagaagttacggctttaagtgaagtaggcacttcgtagtcatggtataattcaatgttcgcaatcgtgg |
32944094 |
T |
|
| Q |
150 |
attgtggaaaataactgtttgttctgattatgctactctacagtgctatattgccactatagctgctgtttgacactctgtactaaatagtgtaccgcaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32944095 |
attgtggaaaataactgtttgttctgattatgctactctacagtgctatattgccactatagctgctgtttgaca------------tagtgtaccgcaa |
32944182 |
T |
|
| Q |
250 |
agcaataacaatttgttgaaattctgctacgatatagccactatttcataacactaacataattttgatgttttgattcaacaatacatgataactacaa |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32944183 |
agcaataacaatttgttgaaattctgctacgatatagccactatttcataacactaacataattttgatgttttgattcaacaatacatgataactacaa |
32944282 |
T |
|
| Q |
350 |
acatgatattagtatatctgtacctgtctttatgttttgacaagcaactgtcttttggtctttaattaactaccctttg |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32944283 |
acatgatattagtatatctgtacctgtctttatgttttgacaagcaactgtcttttggtctttaattaactaccctttg |
32944361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 33532430 - 33532501
Alignment:
| Q |
153 |
gtggaaaataactgtttgttctgattatgctactctacagtgctatattgccactatagctgctgtttgaca |
224 |
Q |
| |
|
|||||||||| | |||||||| ||| |||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
33532430 |
gtggaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgaca |
33532501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 7108195 - 7108146
Alignment:
| Q |
255 |
taacaatttgttgaaattctgctacgatatagccactatttcataacact |
304 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
7108195 |
taacaatttgtttaaattctgctacgatatagccactatttaacaacact |
7108146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 11412613 - 11412672
Alignment:
| Q |
228 |
tgtactaaatagtgtaccgcaaagcaataacaatttgttgaaattctgctacgatatagc |
287 |
Q |
| |
|
|||||||||||||||| |||| | |||||| |||||||| |||||||||| |||||||| |
|
|
| T |
11412613 |
tgtactaaatagtgtatcgcagaacaataaaaatttgtttgaattctgctatgatatagc |
11412672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 16950268 - 16950232
Alignment:
| Q |
259 |
aatttgttgaaattctgctacgatatagccactattt |
295 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
16950268 |
aatttgttcaaattctgctacgctatagccactattt |
16950232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 17223461 - 17223402
Alignment:
| Q |
228 |
tgtactaaatagtgtaccgcaaagcaataacaatttgttgaaattctgctacgatatagc |
287 |
Q |
| |
|
|||||||||| ||||| |||||| ||| ||||||||||| |||||| |||||| |||||| |
|
|
| T |
17223461 |
tgtactaaatcgtgtatcgcaaaacaacaacaatttgttaaaattccgctacgctatagc |
17223402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 7347737 - 7347687
Alignment:
| Q |
228 |
tgtactaaatagtgtaccgcaaagcaataacaatttgttgaaattctgcta |
278 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
7347737 |
tgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgcta |
7347687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University