View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_28 (Length: 433)
Name: NF5717_low_28
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 24877723 - 24877308
Alignment:
| Q |
18 |
aaaggcctcttaattacttctatttttcatggcttttccagattttttatagctgccaataaaatcgaatattgaatataggaacaaatgatcacaagga |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24877723 |
aaaggcctcttaattacttctttttttcatggcttttccagattttttatagctgccaataaaatcgaatattgaatataggaacaaatgatcaaaagga |
24877624 |
T |
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| Q |
118 |
tgaaaaattgttaaaaaatgagattcggacagagtttttcagatgcagtaaaaatgataattaataataatagggaatcttcttgacaatttcatatgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |
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| T |
24877623 |
tgaaaaattgttaaaaaatgagattcggacagagtttttcagatgcagtaaaaatgataatttataataatacggaatcttcttgacaatttcatacgta |
24877524 |
T |
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| Q |
218 |
ccaacaattgtttataagtaaaaatattaagcttatcaaaatattggtatgtaatcactcataataatattgaatattagaaactaataataatattcga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24877523 |
ccaacaattgtttataagtaaaaatattaagcttatcaaaatattggtatgtaatcactcataataatattgaatattagaaactaataataatattcga |
24877424 |
T |
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| Q |
318 |
tttttaatacgtaccaataattgtttctggggcttgagtatttcctctgcgctgaaactcgttgtgtgtttctaaccgtcttctggttcttctactgtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24877423 |
tttttaatacgtaccaataattgtttctggggcttgagtatttcctctgcgctgaaactcgttgtgtgtttctaaccgtcttctggttcttctactgtta |
24877324 |
T |
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| Q |
418 |
gtatgatgttcttctc |
433 |
Q |
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||||||||||| |||| |
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| T |
24877323 |
gtatgatgttcatctc |
24877308 |
T |
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