View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_30 (Length: 407)
Name: NF5717_low_30
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 8233137 - 8232954
Alignment:
| Q |
13 |
atactgcaattgtctaatgtgagacaagaaatatgtgttggaaatataattactgcccaatacaacaaggaaaagactatttgacacgatgaagtttgtt |
112 |
Q |
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| T |
8233137 |
atactgcaattgtctaatgtgagacaagaaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagtttgtt |
8233038 |
T |
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| Q |
113 |
ctgtcttctccaacaagttctcttaattttcctatgtattctttgaacaagtctagttgaccagataatgatattgctgactga |
196 |
Q |
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| T |
8233037 |
ctgtcttctccaacaagttctcttaattttcctatgtattctttgaacaagtctagttgaccagatagtgatattgctgactga |
8232954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 269 - 395
Target Start/End: Complemental strand, 8232886 - 8232761
Alignment:
| Q |
269 |
gaacaagttaagtttttaatggtaactttaattttgaaaagaaattaagggtttaaaatatat----gtaccgcagtttgagatgtcaaaggatcaaatc |
364 |
Q |
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| T |
8232886 |
gaacaagttaagtttttaatggtaacttt-----tgaaaagaaattaagggtttaaaatatatatatgtaccgcagtttgagatgtcaaaggatcaaatc |
8232792 |
T |
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| Q |
365 |
cagcaccaccagatgcaaaacacacaccagt |
395 |
Q |
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| T |
8232791 |
cagcaccaccggatgcaaaacacacaccagt |
8232761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 8289023 - 8288901
Alignment:
| Q |
74 |
acaacaaggaaaagactatttgacacgatgaagtttgttctgtcttctccaacaagttctcttaattttcctatgtattctttgaacaagtctagttgac |
173 |
Q |
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| T |
8289023 |
acaacaacaaaaagactattggccagtatgaagtttgttctttcctcaccaacaatgcctttcaacttcccaatgtattctttgaacatgtctagttgag |
8288924 |
T |
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| Q |
174 |
cagataatgatattgctgactga |
196 |
Q |
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| T |
8288923 |
cagataatggtattactgactga |
8288901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 8270983 - 8270933
Alignment:
| Q |
346 |
gatgtcaaaggatcaaatccagcaccaccagatgcaaaacacacaccagtg |
396 |
Q |
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| T |
8270983 |
gatgtcaaatcatcatatccagcgccaccagatgcaaagcacacaccagtg |
8270933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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