View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_31 (Length: 404)
Name: NF5717_low_31
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Complemental strand, 47476143 - 47475764
Alignment:
| Q |
9 |
agcataggtactccaacaaggcaaggatgttgtgcctattcctggtgagtgacaaaatatgcacaatttttcaaaaacagtattatcataaaaatctttg |
108 |
Q |
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| T |
47476143 |
agcatgggtactccaacaaggcaaggatgttgtgcctattcctggtgagtgacaaaatatgcacaatttttcgaaaacagtattctcataaaaatctttg |
47476044 |
T |
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| Q |
109 |
atggtaggctcttaactggtatcctaacaatatcagaaatatgagtattcctcttatttgtgaatctgaacaattaagagaagaaccatgtatcctaaca |
208 |
Q |
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| T |
47476043 |
atggtaggctcttaactggtatcctaacagtatcagaaatatgagtattcctcttatttgtgaatctgaacaattaagagaagaaccatgtatcctaaca |
47475944 |
T |
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| Q |
209 |
attaagaatgcaccatatacttcttctatcgttgtgtactgatcaattaagaaaagaactatgtacactcgtatttacaccaaaaaatacacttttgtta |
308 |
Q |
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| T |
47475943 |
attaagaatgcaccatatacttcttctatcgttgtgtactgatcaattaagaaaagaactatgtacactcgtatttacaccaaaaaatacacttttgtta |
47475844 |
T |
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| Q |
309 |
gatacgaaaacctaactataataaaaacaaataaatgcacacaagaacataaacaatttatcacatagtttggttaattg |
388 |
Q |
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| T |
47475843 |
gatacgaaaacctaactataataaaaacaaataaatgcacacaagaacataaacaatttatcacatagtttggttaattg |
47475764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 24802241 - 24801949
Alignment:
| Q |
15 |
ggtactccaacaaggcaaggatgttgtgcctattcctggtgagtgacaaaatatgcacaatttttcaaaaacagtattatcataaaaatctttgatggta |
114 |
Q |
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| T |
24802241 |
ggtactccaacaaggcaaggatgttgtgcctattcctggtgagtgacaaaatatgcacaatttttcgaaaacagtattatcataaaaatctttgatggta |
24802142 |
T |
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| Q |
115 |
ggctcttaactggtatcctaacaatatcagaaatatgagtattcctcttatttgtgaatctgaacaattaagagaagaaccatgtatcctaacaattaag |
214 |
Q |
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| T |
24802141 |
ggctcttaagtggtatcctaacagtataagaaatatgagtattcctcttatttgtgaatctgaacaattaagagaagaaccatgtatcctaacaattaag |
24802042 |
T |
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| Q |
215 |
aatgcaccatatacttcttctatcgttgtgtactgatcaattaagaaaagaactatgtacactcgtatttacaccaaaaaatacacttttgtt |
307 |
Q |
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| T |
24802041 |
aatgcaccatatacttcttctatcgttgtgtactgatcaattaagaaaagaactatgtacactcgtatttacaccaaaaaatacacttttgtt |
24801949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 47472890 - 47472719
Alignment:
| Q |
9 |
agcataggtactccaacaaggcaaggatgttgtgcctattcctggtgagtgacaaaatatgcacaattttt-caaaaacagtattatcataaaaatcttt |
107 |
Q |
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| T |
47472890 |
agcatgggtactccaacaaggaaaggatgttgtgcctattcccggtaagtga-aaaatatgcatatttttttcgaaaatagtattattgcaaaaaccttt |
47472792 |
T |
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| Q |
108 |
gatggtagg--ctcttaactggtatcctaacaatatcagaaatatgagtattcctcttatttgtgaatctgaa |
178 |
Q |
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| T |
47472791 |
gatgctagctactcttagctggtatcctaacagtatcagaaatatgagatttcgtcttatttgttaatctgaa |
47472719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 47485621 - 47485574
Alignment:
| Q |
17 |
tactccaacaaggcaaggatgttgtgcctattcctggtgagtgacaaa |
64 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
47485621 |
tactccaacaaggccatgatgttgtgcctattcctggtgagtgacaaa |
47485574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 47472690 - 47472624
Alignment:
| Q |
231 |
cttctatcgttgtgtactgatcaattaagaaaagaactatgtacactc--gtatttacaccaaaaaa |
295 |
Q |
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|||||||||||||| |||||||||| |||| |||||||||||||||| || |||||||||||||| |
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| T |
47472690 |
cttctatcgttgtgcactgatcaatcaagagtagaactatgtacactcttgtctttacaccaaaaaa |
47472624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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