View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_35 (Length: 390)
Name: NF5717_low_35
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 99 - 379
Target Start/End: Original strand, 33439238 - 33439535
Alignment:
| Q |
99 |
caacaacaatatgtctagttcttccaagcgttgtgaagtttgataaagagaaatttgatggnnnnnnnnnn-tcaatattccttagttgaaaaatacaag |
197 |
Q |
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| T |
33439238 |
caacaacaatatgtctagttcttccaagcgatgtgaagtttgataaagagaaatttgatggaaaaaaataaataaatattctttagttgaaaaatacaag |
33439337 |
T |
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| Q |
198 |
tcaatgatgtgttgatacaataagtattt-agttcttcaaagcat---------------agagaaatttgctggnnnnnnnnnnnntcaatattcccta |
281 |
Q |
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| T |
33439338 |
tcaatgatgtgttgatacaataagtattttagttcttcaaagcattgagaagtttgacaaagagaaatttgctggaaaaaaaaaaaatcaatattcccta |
33439437 |
T |
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| Q |
282 |
gtgaaaaaatacatgtcaaggatgtgttgatataataaggatttcacaaaacattggttatctttgatgcaaggtattttgtgaaattatgtccattg |
379 |
Q |
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| T |
33439438 |
gtgaaaaaatacacgtcaatgatgtgttgatataataaggatttcacaaaatattggttatcattgatgcaaggtattttgtgaaattatgtccattg |
33439535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 33438406 - 33438499
Alignment:
| Q |
9 |
gagaagaatggtggtattgtaaaagtgttattttgaataaattatggcttgaaatgatttgatactcgattttttcattgtgactcactacaac |
102 |
Q |
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| T |
33438406 |
gagaagaatggtggtattgtaaaagtgttattttaaataaattatggcttgaaatgatttgatactcgattttttcattgtgactcactgcaac |
33438499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 33444609 - 33444654
Alignment:
| Q |
285 |
aaaaaatacatgtcaaggatgtgttgatataataaggatttcacaa |
330 |
Q |
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| T |
33444609 |
aaaaaatatatgtcaatgatatgttgatacaataaggatttcacaa |
33444654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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