View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_36 (Length: 386)
Name: NF5717_low_36
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 40848387 - 40848041
Alignment:
| Q |
1 |
cgagataacgttgatgatcaaggtcagcttcagcggaagattgcggcggatgatgagtgcggcgtttgagacgaggtggaattggaccggagagaagatg |
100 |
Q |
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| T |
40848387 |
cgagataacgttgatgatcaaggtcagcttcagcggaagattgcggcggatgatgagtgcggcgtttgagacgaggtggaattggaccggagagaagatg |
40848288 |
T |
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| Q |
101 |
acgaacgtcgtaacgatcgattgaaagagaattccaatcaacaagagcttccggtgagttcacgaacgccgccatgccgtcgtcgtcgaacagcatcgcg |
200 |
Q |
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| T |
40848287 |
acgaacgtcgtaacgatcgattgaaagagaattccaatcaacaagagcttccggtgagttcacgaacgccgccatgccgtcgtcgtcgaacagcatcgcg |
40848188 |
T |
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| Q |
201 |
tgacggccaacgacttctagatccattgaattctagaatcttcttcgattcagagaaatgaaaatttgatgaatcaacgcgcgcgtgcacagggtattga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40848187 |
tgacggccaacgacttctagatccattgaattctagaatcttcttcgattcagagaaatgaaaatttgatgaatcaacgcgcgcgtgcacagggtattga |
40848088 |
T |
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| Q |
301 |
gaatttgagaaatggaaattgaaattgtgaatgtgatgattattgaa |
347 |
Q |
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| T |
40848087 |
gaatttgagaaatggaaattgaaattgtgaatgtgatgattattgaa |
40848041 |
T |
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