View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_low_37 (Length: 385)
Name: NF5717_low_37
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 13885632 - 13885959
Alignment:
| Q |
1 |
agatgttttgatattgctatgaatatcagaattaatatatggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgat |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
13885632 |
agatgttttgatattgctacgaatatcagaattaatatatggagaacttggggctgaattgtctgttatgccataaatgctagagagggatgttgtcgat |
13885731 |
T |
|
| Q |
101 |
gaataaaagtcagatttatatgtgaagccatcagaaaaacacggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacctgagtaaattgag |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13885732 |
gaataaaagtcagatttatatgtcaagccatcagaaaaacacggttctgaaagtgaaaaagcaggacttgcacatacgctacgaacctgagtaaattgag |
13885831 |
T |
|
| Q |
201 |
aggtgtcatctgagtttttattattctcgttgattttagttacaacagcaacttctttcatctttgaaaaactcgaatcatcgataattcgattttttcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
13885832 |
aggtgtcatctgagtttttattattctcgttgattttagttacaacagcaacttctttcatctttgaaaaactcgaatcattgataattcgattatttcc |
13885931 |
T |
|
| Q |
301 |
ctcatgaaccctaattcgttcacatctc |
328 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
13885932 |
ctcatgaaccctaattggttcacatctc |
13885959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 1220153 - 1220198
Alignment:
| Q |
285 |
taattcgattttttccctcatgaaccctaattcgttcacatctcct |
330 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
1220153 |
taattcgattgtttccgtcatgaaacctaattggttcacatctcct |
1220198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 29092102 - 29091915
Alignment:
| Q |
1 |
agatgttttgatattgctatgaatatcagaattaatatatggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||| || ||||||| |||||| || ||||| | | ||| |
|
|
| T |
29092102 |
agatgttttgatattgctatgaatatctggattaatatatggagaacttgggactgaattgtctgtcatgccatgaatgctggagagggacgacactgat |
29092003 |
T |
|
| Q |
101 |
gaataaaagtcagatttatatgtgaagccatcagaaaaacacggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacct |
188 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||||||||||| ||||| ||||||| |||| |||||||||||| |||||||| |||| |
|
|
| T |
29092002 |
gaataaaattcagatttatatgacaagccgtcagaaaaacaccgttctgaaagtgacaaagtaggacttgcacacacgctatgtacct |
29091915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 31913691 - 31913648
Alignment:
| Q |
285 |
taattcgattttttccctcatgaaccctaattcgttcacatctc |
328 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
31913691 |
taattcgattgtttccatcatgaaccctaattggttcacatctc |
31913648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University