View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_41 (Length: 374)
Name: NF5717_low_41
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 29208815 - 29208467
Alignment:
| Q |
19 |
aagagagcatgcaaatcctagagcatgtttgtgatgtagcaacagaaattaaattaaatttttcagacagttaccaacctccaaacttcatcttttctca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208815 |
aagagagcatgcaaatcctagagcatgtttgtgatgtagcaacagaaattaaattaaatttttcagacagttaccaacctccaaacttcatcttttctca |
29208716 |
T |
|
| Q |
119 |
ctctttatatagccccctcaattcaacaacggttacatagttacacatttattccacttaaacatggagagagcaaacactaaatctactttgaaggttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208715 |
ctctttatatagccccctcaattcaacaacggttacatagttacacatttattccacttaaacatggagagagcaaacactaaatctactttgaaggttg |
29208616 |
T |
|
| Q |
219 |
gactagtgattaattttttataatgtagttttgttctacttcctcttagttaattaatactatgtcctaattgtttcactttcttttgcaatttccttaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29208615 |
gactagtgattaattttttataatgtagttttgttctacttcctcttagttaattaatactatgtcctaattgtttcactttcttttgcattttccttaa |
29208516 |
T |
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| Q |
319 |
ttttccatggccaaaagtttgtcaagaacggttcacaatcttcatctca |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208515 |
ttttccatggccaaaagtttgtcaagaacggttcacaatcttcatctca |
29208467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 38377577 - 38377782
Alignment:
| Q |
19 |
aagagagcatgcaaatcctagagcatgtttgtgatgtagcaacagaaattaaat--taaatttttcagacagttaccaacctccaaacttcatcttttct |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||| |
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| T |
38377577 |
aagagagcatgcaaatcctagagcatgtt---gatgtagcaacagaaattaaatattgaacctttcagacagttaccaacctccaaacttcatattttct |
38377673 |
T |
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| Q |
117 |
cactc--tttatatagccccctcaattcaacaacg----gttacatagttacacatttattccacttaaacatggagagagcaaacactaaatctacttt |
210 |
Q |
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||||| | ||||||| ||||| ||||| |||| | | ||||||||||||| | |||||||||||||||||||| |||||||| ||||| ||| |
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| T |
38377674 |
cactctatatatatagtcccct-tgttcaataacgactagctgcatagttacacatcaagtccacttaaacatggagagaccaaacactgaatctgtttt |
38377772 |
T |
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| Q |
211 |
gaaggttgga |
220 |
Q |
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|||||||||| |
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| T |
38377773 |
gaaggttgga |
38377782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 38378088 - 38378198
Alignment:
| Q |
258 |
ttcctcttagttaattaatactatgtcctaattgtttcactttct--tttgcaatttccttaattttccatggccaaaagtttgtcaagaacggttcaca |
355 |
Q |
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|||||||| |||||||||||||| ||||||||||||| | |||| |||||| |||||||||||||| || ||||||||||||||||| |||||| |
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| T |
38378088 |
ttcctcttggttaattaatactaattcctaattgtttc-cattctactttgcattttccttaattttctgcggtgaaaagtttgtcaagaacacttcaca |
38378186 |
T |
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| Q |
356 |
atcttcatctca |
367 |
Q |
| |
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||||||||||| |
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| T |
38378187 |
gtcttcatctca |
38378198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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