View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_46 (Length: 356)
Name: NF5717_low_46
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 171 - 347
Target Start/End: Original strand, 5809261 - 5809439
Alignment:
| Q |
171 |
acataaacgaatgaaaaattaaatagagattataacagaactagtctataaggctataagatgtgataataagctatcatatgtacctcaccaaaataaa |
270 |
Q |
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| T |
5809261 |
acataaaggaatgaaaaattaaatagagattataacagaagtagtctataagcctataagatgtgataataagctatcatatgtacctcaccaaaataaa |
5809360 |
T |
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| Q |
271 |
gaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattat |
347 |
Q |
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| T |
5809361 |
gaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgtcgaggcgagaattat |
5809439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 37751365 - 37751443
Alignment:
| Q |
1 |
agcagtctctgtggagtcaaactcaacaaatccaaacccaatagaaacatttttcccatttttcaaattcttcttcttc |
79 |
Q |
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| T |
37751365 |
agcagtctctgtggagtcaaactcaacaaatccaaatcccatagaaacatttttcccatttttcaaatgcttcttcttc |
37751443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37735861 - 37735936
Alignment:
| Q |
1 |
agcagtctctgtggagtcaaactcaacaaatccaaacccaatagaaacatttttcccatttttcaaattcttcttc |
76 |
Q |
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| T |
37735861 |
agcagtctctgtggagtcaaactcaacaaatccaaatcccatagaaacatttttcccatttttcaaatgcttcttc |
37735936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38611203 - 38611128
Alignment:
| Q |
1 |
agcagtctctgtggagtcaaactcaacaaatccaaacccaatagaaacatttttcccatttttcaaattcttcttc |
76 |
Q |
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| T |
38611203 |
agcagtctctgcagagtcaaactcaacaaatccaaatcccatagaaacatttttcccttttttcaaatgcttcttc |
38611128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 37754630 - 37754750
Alignment:
| Q |
100 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
199 |
Q |
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| T |
37754630 |
atatcaggacacaagactgttccacaaccacatattatgaaagaagaaatactatcgaaagttgaattgagaaataattgaatgaaaactttattagaaa |
37754729 |
T |
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| Q |
200 |
ttataacagaactagtctata |
220 |
Q |
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| T |
37754730 |
ttataataaaactaggctata |
37754750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 37760604 - 37760724
Alignment:
| Q |
100 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
199 |
Q |
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| T |
37760604 |
atatcaggacacaagactgttccacaaccacatattatgaaagaagaaatactatcgaaagttgaattgagaaataattgaatgaaaactttattagaaa |
37760703 |
T |
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| Q |
200 |
ttataacagaactagtctata |
220 |
Q |
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| T |
37760704 |
ttataataaaactaggctata |
37760724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 37738773 - 37738892
Alignment:
| Q |
100 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
199 |
Q |
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| T |
37738773 |
atattaggacacaagactgttccacaaccacatattatggaagaagaaatacg-ttgaaagttgaattaagacataattgaaacaaaactttagtagaaa |
37738871 |
T |
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| Q |
200 |
ttataacagaactagtctata |
220 |
Q |
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|||||||| |||||| ||||| |
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| T |
37738872 |
ttataacaaaactaggctata |
37738892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 38606051 - 38605959
Alignment:
| Q |
128 |
cacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagagattataacagaactagtctata |
220 |
Q |
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| T |
38606051 |
cacatattatgaaagaagaaatactattgaaagttgaattaagacataattgaatgaaaactttattagaaattataataaaactaggctata |
38605959 |
T |
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