View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_48 (Length: 347)
Name: NF5717_low_48
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 28386392 - 28386064
Alignment:
| Q |
15 |
acatgtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatctgccgccctccgccttcacaccgttgaattcccctatcaa |
114 |
Q |
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| T |
28386392 |
acatgtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatctgccgccctccgccttcacaccgttgaattcccctatcaa |
28386293 |
T |
|
| Q |
115 |
caagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28386292 |
caagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatgaagcgg |
28386193 |
T |
|
| Q |
215 |
ttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386192 |
ttggggatttcgttgagaagaatccaccggattgtattattgctgactccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatct |
28386093 |
T |
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| Q |
315 |
aacgtttaatggatcgtctctctctgctg |
343 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
28386092 |
aacgtttaatggatcgtctctctttgctg |
28386064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 12541733 - 12541465
Alignment:
| Q |
19 |
gtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatctgccgccctccgccttcacaccgttgaattcccctatcaacaag |
118 |
Q |
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|||||||||||||||||||||||||||| || ||||||| ||| ||||| |||| | |||| ||||||||| || || ||||||| |||||| |
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| T |
12541733 |
gtcacaatcatcaccactccctccaatgttgaaacccttaccaaatctctcccatc---catcctcacccttcacactgtcgacttcccctccgaacaag |
12541637 |
T |
|
| Q |
119 |
tcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttgg |
218 |
Q |
| |
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||||||||||||||||| |||| |||||| |||||||||||||||| || ||| ||||||| || || ||||| |||||||||||| ||| ||| ||| |
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| T |
12541636 |
tcgacctccctaaaggcattgaatctatgtcctccaccactgaccccattacctcttggaaaattcacaatggtgcaatgctcctccatggacccattga |
12541537 |
T |
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| Q |
219 |
ggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgacttggc |
290 |
Q |
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||||| |||| ||| |||||||| |||||||| ||||| || || | | |||||||| |||||||||||| |
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| T |
12541536 |
tgattttgttgtgaataatccacctgattgtatcattgccgactcttcttactcatggggtaatgacttggc |
12541465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 3416651 - 3416953
Alignment:
| Q |
15 |
acatgtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatctgccgc---------cctccgccttcacaccgttgaattc |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| ||||| ||| |||| || | |||||| |||||||||||||||||| || || |
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| T |
3416651 |
acatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctttcttatgccgctcccttcttcctccgccttcacaccgtcgacttt |
3416750 |
T |
|
| Q |
106 |
ccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccataatggcgcaatgctcctca |
205 |
Q |
| |
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|||| ||||||| | ||||||||| ||||| |||| ||||| |||||||||| |||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
3416751 |
ccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccaccgacctcgtcaccacttggaagatcaacaatggcgcaatgctcctcc |
3416850 |
T |
|
| Q |
206 |
atgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgacttggcccacaagcttcaaat |
305 |
Q |
| |
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|| ||| ||| ||||||| || | || ||||||| |||||||| || | || || |||| | |||||| ||||||||||||||| ||||||||||| |
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| T |
3416851 |
atcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaatgacttggcccagaagcttcaaat |
3416950 |
T |
|
| Q |
306 |
ccc |
308 |
Q |
| |
|
||| |
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|
| T |
3416951 |
ccc |
3416953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 13441260 - 13440962
Alignment:
| Q |
19 |
gtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatctgccgc---------cctccgccttcacaccgttgaattcccct |
109 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| || ||| |||||||||| || || ||||||| | |||||||| || || |||| |
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| T |
13441260 |
gtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttcttcctccgcttccacaccgtcgactttccct |
13441161 |
T |
|
| Q |
110 |
atcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatga |
209 |
Q |
| |
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|||||||||||||||||| ||||| |||| |||||| | |||||||||||| |||| ||| ||||||||||||| |||||||||||||||| ||| |
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| T |
13441160 |
cccaacaagtcgacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtggcgcaatgctcctccatgg |
13441061 |
T |
|
| Q |
210 |
accggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgacttggcccacaagcttcaaatccc |
308 |
Q |
| |
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| | ||| ||||||| | ||||| ||||||| |||||||| || | || ||||||| | ||||||||||||||||||| || |||||||| ||||| |
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| T |
13441060 |
atccattgaggatttcatggagaaagatccaccagattgtatcatctccgactccgcatacccatgggctaatgacttggcgcataagcttcagatccc |
13440962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 88 - 308
Target Start/End: Complemental strand, 13449345 - 13449125
Alignment:
| Q |
88 |
cttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccata |
187 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||| |||| |||| |||||| | || || || ||||| | |||||||||||||||||||| |
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| T |
13449345 |
cttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtcttcaactacggaccccaccaccacttggaagatccata |
13449246 |
T |
|
| Q |
188 |
atggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgactt |
287 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||||| || | || ||| | | | |||||| ||||||||| |
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| T |
13449245 |
ctggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacgtacccatgggttaatgactt |
13449146 |
T |
|
| Q |
288 |
ggcccacaagcttcaaatccc |
308 |
Q |
| |
|
|||| | ||| |||| ||||| |
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| T |
13449145 |
ggccgataagtttcagatccc |
13449125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 13462444 - 13462229
Alignment:
| Q |
19 |
gtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatctgccgc---------cctccgccttcacaccgttgaattcccct |
109 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||||||||| ||| |||||||||| ||||| ||| ||| |||||||| | |||||||||| |
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| T |
13462444 |
gtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctctctcatccgccgctccctccctccttcgctttcacaccatcgaattcccct |
13462345 |
T |
|
| Q |
110 |
atcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatga |
209 |
Q |
| |
|
|||||||| | ||| ||| | ||| |||| |||||| | |||||||| ||| | | ||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
13462344 |
cccaacaagttggccttcctgatggcattgaatctatgtcttccaccaccgactccaccacatcttggaagatccatcatggcgcaatgctcctccatgg |
13462245 |
T |
|
| Q |
210 |
accggttggggatttc |
225 |
Q |
| |
|
||| ||| ||||||| |
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| T |
13462244 |
acccattgaggatttc |
13462229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 12640677 - 12640761
Alignment:
| Q |
81 |
cctccgccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccct |
165 |
Q |
| |
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|||||||||||||||||| || ||||||| ||||||||||| || || | |||||||| || || ||||||||||| ||||| |
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| T |
12640677 |
cctccgccttcacaccgtcgacttcccctcccaacaagtcgatcttcccgacggcgttgaatcattgtcctccaccactaaccct |
12640761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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