View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_5 (Length: 685)
Name: NF5717_low_5
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 39829 - 40480
Alignment:
| Q |
1 |
ttgatgttgatgttgatgttgatctggatgtggatccttctccttcgccgcctc------------ctcctcatattcccgattcgctggttagtactgt |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
39829 |
ttgatgttgatgttgatgttgatctggatgtggatccttctccttcgccgcctcctcctcctcctcctcctcatattcccgattccctggttagtactgt |
39928 |
T |
|
| Q |
89 |
tacccaacaaccatctagtcatgttgctcctgctgttagtgttagcgctactgaattgaaaaatgagagcagagacgcagcaaacgatgaagaagaaacg |
188 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
39929 |
tacccaacaaccatctagtgatgttgctcctgctgttagtgttagcgctactgaattgaaaaatgagagcagagacgcatcacacgatgaagaagaaacg |
40028 |
T |
|
| Q |
189 |
ttccggaaaataagggagacgatacatgagaagcttagccatgcccgtcaactgctaaactctgcatcttctgctcgaaaggatgccatcaggagtagaa |
288 |
Q |
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| T |
40029 |
ttccggaaaataagggagacgatacatgagaagcttagccatgcccgtcaactgctaaactctgcatcttctgctcgaaaggatgccatcaggagtagaa |
40128 |
T |
|
| Q |
289 |
gaaaggcctttcagaatgctaatcttgcttctcttaaatacatggaacttgagaaccaattagaacaagcttgtgaagctgaagattttgaaaccgctga |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40129 |
gaaaggcctttcagaatgctaatcttgcttctcttaaatacatggaacttgagaaccaattagaacaagcttgtgaagctgaagattttgaaaccgctga |
40228 |
T |
|
| Q |
389 |
aatggttagccaacacctttctgcctctgagaaggacaaacaaatctgtaccgaatcattgaggcaagctgatgcctttatcgatgctttagatttgaaa |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40229 |
aatggttagccaacacctttctgcctctgagaaggacaaacaaatctgtaccgaatcattgaggcaagctgatgcctttatcgatgctttagatttgaaa |
40328 |
T |
|
| Q |
489 |
ttgcagcatgccctcgactctcacatagctgctgaggaagaatctgcaacattactccaccattatgcaacggtcagtatattctattcttttaagacat |
588 |
Q |
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| T |
40329 |
ttgcagcatgccctcgactctcacatagctgctgaggaagaatctgcaacattactccaccattatgcaacggtcagtatattctattcttttaagacat |
40428 |
T |
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| Q |
589 |
ctatgtatgactgactactctaggttcatctcattccaattagtatattccttcgc |
644 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40429 |
ctatgta----tgactactctaggttcatctcattccaattagtatattccttcgc |
40480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 643 - 680
Target Start/End: Original strand, 40503 - 40540
Alignment:
| Q |
643 |
gcctcttgctacagcgatactctctgcctttgctactc |
680 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40503 |
gcctcttgctacagcgatactctctgcctttgctactc |
40540 |
T |
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