View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_52 (Length: 337)
Name: NF5717_low_52
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 53490166 - 53490472
Alignment:
| Q |
1 |
ccgaataagtgtttgtttgagatattgattcgtgagattcatccaaagtgctacaagttgatgatgagttttaaaatgaagtagcttctagtagggtcta |
100 |
Q |
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| T |
53490166 |
ccgaataagtgtttatttgtgatattgattcgtgagattcatccaaagtgctacaagttgatgatgagtttaaaaatgaagtagcttctagtagggtcta |
53490265 |
T |
|
| Q |
101 |
tagcactttcttggctttcatcatcatccttttattacaaccgtataaattctaagaaacatgaaccatcaacttttttgatcgaaatttcaccgactct |
200 |
Q |
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| T |
53490266 |
tagcactttcttggctttcatcatcatccttttattacaaccgtataaattct-agaagcatgaaccatcaacttttttgatcgaaatttcaccgactct |
53490364 |
T |
|
| Q |
201 |
tcggtaaatagtcgtggataaaatgttgctcaaaattctcccttccaaatccaaccacatcaccacgtgtgaattttccgataccgcttgttgaagcaaa |
300 |
Q |
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| T |
53490365 |
tgggtaaatagtcgtggataaaatgttgctcaaaattctcccttccaagt------------ccacgtgtgaattttctgataccgcttgttgaagcaaa |
53490452 |
T |
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| Q |
301 |
gcttatttcacagtcaaatt |
320 |
Q |
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|||||||||||||||||||| |
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| T |
53490453 |
gcttatttcacagtcaaatt |
53490472 |
T |
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