View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_54 (Length: 329)
Name: NF5717_low_54
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 8167816 - 8167516
Alignment:
| Q |
14 |
ttctaaaaaagaaagagtcagttccatattttgggaacaaaacaaagttttctttcatatttggttattgagttctttcttccctctttctcctcttgga |
113 |
Q |
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| T |
8167816 |
ttctataaaagaaagagtcggttccatattttgggaccaaaacaaagttttctttcatatttggttattgagttctttcttccctctttctcctcttgga |
8167717 |
T |
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| Q |
114 |
agaaagatccaatggcttcttcagacggaaacaacacatcaacaaaaagcaacaacaaacgtaagag---aaccattaaaatcaagaaagcagaacaatc |
210 |
Q |
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| T |
8167716 |
agaaagatccaatggcttcttcaaacggaaacaacacatcaacaaaaagcaacaacaaacgtaagagatcaaccattaaaatcaagaaagcagaacaatc |
8167617 |
T |
|
| Q |
211 |
aaacaagccccgcgattccttctcaaaacgcaaactagggctcttcaagaaagttacagaactatctattctttgcaatgcaaaaactgcaatgatcatc |
310 |
Q |
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| T |
8167616 |
aaacaagcccctcgataccttctcaaaacgcaaactagggctcttcaacaaagttacagaactatctatcctatgcaatgcaaaaactgcaatgatcatc |
8167517 |
T |
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| Q |
311 |
a |
311 |
Q |
| |
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| T |
8167516 |
a |
8167516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 293
Target Start/End: Complemental strand, 8999351 - 8999198
Alignment:
| Q |
140 |
ggaaacaacacatcaacaaaaagcaacaacaaacgtaagagaaccattaaaatcaagaaagcagaacaatcaaacaagccccgcgattccttctcaaaac |
239 |
Q |
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| T |
8999351 |
ggaaacatcatattaacaaaacacaacgacacacctaagagaatcaatgaaattaagaaagtagaagaatctaacaagctggatgataccttctcaaaac |
8999252 |
T |
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| Q |
240 |
gcaaactagggctcttcaagaaagttacagaactatctattctttgcaatgcaa |
293 |
Q |
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| T |
8999251 |
gcaaattaggactcttcaacaaagtcacataactattcattttatgcaatgcaa |
8999198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 106 - 311
Target Start/End: Complemental strand, 50707789 - 50707583
Alignment:
| Q |
106 |
ctcttggaagaaagatccaatggcttctt-cagacggaaacaacacatcaacaaaaagcaacaacaaacgtaagagaaccattaaaatcaagaaagcaga |
204 |
Q |
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|||||||||||||||| |||||||||||| | || ||||||||||| ||||||||| | | |||| ||| |||| ||||||| |||||||||||||| | |
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| T |
50707789 |
ctcttggaagaaagattcaatggcttcttacggatggaaacaacacgtcaacaaaacgaagcaactcacggaagaaaaccattgaaatcaagaaagcaaa |
50707690 |
T |
|
| Q |
205 |
acaatcaaacaagccccgcgattccttctcaaaacgcaaactagggctcttcaagaaagttacagaactatctattctttgcaatgcaaaaactgcaatg |
304 |
Q |
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| T |
50707689 |
gccatcgaacaagcggcgtgataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaaaaaccgcactg |
50707590 |
T |
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| Q |
305 |
atcatca |
311 |
Q |
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||||||| |
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|
| T |
50707589 |
atcatca |
50707583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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