View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_55 (Length: 326)
Name: NF5717_low_55
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 46 - 320
Target Start/End: Complemental strand, 41901255 - 41900980
Alignment:
| Q |
46 |
caaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgctt |
145 |
Q |
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| T |
41901255 |
caaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccgtattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgctt |
41901156 |
T |
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| Q |
146 |
aatccggtagttcacttgtttttactaatattgt-ttttaaattaatgttaacagctttaatcacctcaaattgcagcccaatacatcaatttttaccga |
244 |
Q |
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| T |
41901155 |
aatccggtagttcacttgtttttactaatattgttttttaaatcaatattaacagctttaatcacctcaaattgcagcccaatacatcaatttttaccga |
41901056 |
T |
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| Q |
245 |
gccgtatgatccagtggacaagcgtgacaaggcattgggttagaacttatgcttcttatattttaattttcttcga |
320 |
Q |
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| T |
41901055 |
gccgtatgatccagtggacaagtgtgacaaggcattgggttagaacttatgcttcttatattttgatttttttcga |
41900980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 50 - 316
Target Start/End: Complemental strand, 41896215 - 41895932
Alignment:
| Q |
50 |
gaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatc |
149 |
Q |
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| T |
41896215 |
gaactgaaaaaagtgtgggacactatcaagaaaggaggaccgtattctgcttcaaatacgttgctgatcgatgacaaaccatacaagtctttccttaatc |
41896116 |
T |
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| Q |
150 |
cggtagttcacttgtttt------tactaatat-------tgtttttaaat-taatgttaacagctttaatcacctcaaattgcagcccaatacatca-- |
233 |
Q |
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| T |
41896115 |
cggtaattcacttgtttttctttatattaatataaaaaactgtttttgaatcaaatattaacagctttaatcacctcaaattgcagcccaatacatcaat |
41896016 |
T |
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| Q |
234 |
-atttttaccgagccgtatgatccagtggacaagcgtgacaaggcattgggttagaacttatgcttcttatattttaattttct |
316 |
Q |
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| T |
41896015 |
tatttttcctaagtcatatgatcctgaggacaaggatgacaaggcactgggttagaacttatgcttcttatattttatttttct |
41895932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 41891246 - 41891125
Alignment:
| Q |
47 |
aaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgctta |
146 |
Q |
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| T |
41891246 |
aaggaactaaaagaagtgtgggatgatgtcaagaaaggatgtccatattctgcttcaaataccttgatgattgatgccagaccatacaggtccttcctta |
41891147 |
T |
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| Q |
147 |
atccggtagttcacttgttttt |
168 |
Q |
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| T |
41891146 |
atccgttaatgcacatgttttt |
41891125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 34454209 - 34454271
Alignment:
| Q |
74 |
gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaag |
136 |
Q |
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| T |
34454209 |
gtcaagaaaggaggtccatattctgcttctaatactttgatgattgatgacaaaccatacaag |
34454271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 41885185 - 41885112
Alignment:
| Q |
77 |
aagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatcc |
150 |
Q |
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| T |
41885185 |
aagaaaagaggcccatattctgcttctaatactttgatgattgatgacaaagcatataagtccttcattaatcc |
41885112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 41829477 - 41829544
Alignment:
| Q |
74 |
gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtcctt |
141 |
Q |
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| T |
41829477 |
gtcaagaaaggaggctcatattctccttctaatactttgatgattgatgacaaagcatataagtcctt |
41829544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 41891064 - 41891019
Alignment:
| Q |
253 |
atccagtggacaagcgtgacaaggcattgggttagaacttatgctt |
298 |
Q |
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| T |
41891064 |
atccagaggacaagggtgacaaagcactgggttagaacttatgctt |
41891019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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