View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_58 (Length: 318)
Name: NF5717_low_58
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10746046 - 10745742
Alignment:
| Q |
1 |
atttatctccattcctttgtcattttatttcattttattaataattttcactgtagtcaaaattcaggtacaaaattgttacatgtatttttagcnnnnn |
100 |
Q |
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| T |
10746046 |
atttatctccattcctttgtcatgttatttcattttattaagaattttcactgtagtcaaaattcaggtacaaaattgttacatgtatttttagcaaaaa |
10745947 |
T |
|
| Q |
101 |
nnnnnnncagaaatataatatatagttttgcaaaagaagggagctcaagtcaagagtttcattgttgaatgtaatacactcaaatattttgaataatctt |
200 |
Q |
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| T |
10745946 |
aaaaaa-cagaaatataatatatagttttgcaaaagaagggagctcaagtcaagagtttcattgttgaatgtaatacactcaaatattttgaataatctt |
10745848 |
T |
|
| Q |
201 |
ttttattcaaaacataaaactacaattttctatcgaaaagagacattatcatcacactgaaatttggatatttgtatgtagtaattcatgtagtttgaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10745847 |
ttttattcaaaacataaaactacaattttctatcgaaaagagacattatcatcacactgaaatttggatatttgtatgtagtaattcatgtagtttgaat |
10745748 |
T |
|
| Q |
301 |
tttgat |
306 |
Q |
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|||||| |
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| T |
10745747 |
tttgat |
10745742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 10758325 - 10758239
Alignment:
| Q |
197 |
tcttttttattcaaaacataaaactacaattttctatcgaaaagagacattatca-tcacactgaaatttggatatttgtatgtagt |
282 |
Q |
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| T |
10758325 |
tcttttttattcaaaacagaaaactacagttttctatcgaaaagagacattatcattcacactggaatttggatatttctatgtagt |
10758239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 10564934 - 10564984
Alignment:
| Q |
131 |
caaaagaagggagctcaagtcaagagtttcattgttgaatgtaatacactcaaa |
184 |
Q |
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| T |
10564934 |
caaaagaagggagctca---caagagtttcattgttgaatgtaatgcactcaaa |
10564984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 10741000 - 10740951
Alignment:
| Q |
132 |
aaaagaagggagctcaagtcaagagtttcattgttgaatgtaatacactcaaa |
184 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
10741000 |
aaaagaagggagctca---caagagtttcattgttgaatgtaatgcactcaaa |
10740951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 10717241 - 10717196
Alignment:
| Q |
132 |
aaaagaagggagctcaagtcaagagtttcattgttgaatgtaatacact |
180 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
10717241 |
aaaagaagggagctca---caagagtttcattgttgaatgtaatgcact |
10717196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 10747317 - 10747276
Alignment:
| Q |
131 |
caaaagaagggagctcaagtcaagagtttcattgttgaatgtaat |
175 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
10747317 |
caaaagaagggagctca---caagagtttcattgttgaatgtaat |
10747276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 11048942 - 11048909
Alignment:
| Q |
151 |
caagagtttcattgttgaatgtaatacactcaaa |
184 |
Q |
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||||||||||||||||||||||||| |||||||| |
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|
| T |
11048942 |
caagagtttcattgttgaatgtaatgcactcaaa |
11048909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 12932184 - 12932236
Alignment:
| Q |
129 |
tgcaaaagaagggagctcaagtcaagagtttcattgttgaatgtaatacactcaaa |
184 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
12932184 |
tgcaaaaaaagggagctca---caagagtttcattgttgaatgtaacgcactcaaa |
12932236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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