View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_59 (Length: 316)
Name: NF5717_low_59
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 36103231 - 36103524
Alignment:
| Q |
19 |
attttgaagtacataaacttgcatgagatcaagattcaggtataggatttgggtttatcaactcctcactatatcgagtttgacatgaaaacagccttta |
118 |
Q |
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| T |
36103231 |
attttgaagtacataaacttgcatgagatcaagattcaggtataggatttgggtttatcaactcctcgctatatcgagtttgacatgaaaacagccttta |
36103330 |
T |
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| Q |
119 |
gcattgttgatgatctaaactcttaagtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaatatatactg |
218 |
Q |
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| T |
36103331 |
gcattgttgatgatctaaactcttaagtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaatatatactg |
36103430 |
T |
|
| Q |
219 |
tcaagctag-nnnnnnnncatatatacatttgggctaaaagaaaaaaccttgagcaatttttctaaattgctttgttcatgtccctatgctact |
311 |
Q |
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| T |
36103431 |
tcaagctagtttttttttcatatatacatttgggctaaaagaaaaaacctggagcaatttttctaaattgctttgttcatgtccttatgctact |
36103524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 311
Target Start/End: Original strand, 36141547 - 36141837
Alignment:
| Q |
31 |
ataaacttgcatgagatcaagattcaggtataggatttgggtttatcaactcctcactata---------tcgagtttgacatgaaaacagcctttagca |
121 |
Q |
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| T |
36141547 |
ataaacttgcatgagatcaagatttaggtataggatttgggtttatcaactcctcactataccaagactatcgagtttgacatgaaaacaacctttagca |
36141646 |
T |
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| Q |
122 |
ttgttgatgatctaaactcttaagtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaatatatactgtca |
221 |
Q |
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| T |
36141647 |
ttgttgatgatctaagctcttaagtattgtcgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaatatatactgtca |
36141746 |
T |
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| Q |
222 |
agctag-nnnnnnnncatatatacatttgggctaaaagaaaaaaccttgagcaatttttctaaattgctttgttcatgtccctatgctact |
311 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36141747 |
agctagtttttttttcatatatacatttgggctataagaaaaaaccttgagcaatttttctaaattgctttgttcatgtccttatgctact |
36141837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 10856423 - 10856725
Alignment:
| Q |
19 |
attttgaagtacataaacttgcatgagatcaagattcaggtataggatttgggtttatcaactcctcactatatcgag---------tttgacatgaaaa |
109 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
10856423 |
attttgaagtacataaacttgcatgtgatcaagattcaggtataggatttgggtttatcaactcctcactataccaagactattaagtttgacatgaaaa |
10856522 |
T |
|
| Q |
110 |
cagcctttagcattgttgatgatctaaactcttaagtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10856523 |
cagcctttagcattgttgatgatctaaactcttacgtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaa |
10856622 |
T |
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| Q |
210 |
tatatactgtcaagctag-nnnnnnnncatatatacatttgggctaaaagaaaaaaccttgagcaatttttctaaattgctttgttcatgtccctatgct |
308 |
Q |
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|||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10856623 |
tatatactgtcaagctagtttttttttcatatgtacatttgggctataagaaaaaacgttgagcaatttttctaaattgctttgttcatgtccttatgct |
10856722 |
T |
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| Q |
309 |
act |
311 |
Q |
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||| |
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| T |
10856723 |
act |
10856725 |
T |
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