View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_60 (Length: 314)
Name: NF5717_low_60
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 4027400 - 4027219
Alignment:
| Q |
16 |
aattgcctctgattctgcttctgttaatttgcatttcctcagagacaatacatacattctggaagtaaggcattgccatatggaattgttgctagaaaat |
115 |
Q |
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| T |
4027400 |
aattgcctctgattctgcttctgttaatttgcatttcctcagagacaatacatacattctggaagtaaggcattgccatatggaattgttgctagaaaat |
4027301 |
T |
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| Q |
116 |
ctaacttcgaaatgcgtccattatggtactctggtacaaatcatgtatgtgaaatatgttcttctacgtactcatccatctatagt |
201 |
Q |
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| T |
4027300 |
ctaacttcgaaatgcgtccattttggtactcttgtacaaatcatgtatgtgaagtatgttctgc----tactcatccatctatagt |
4027219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 4013101 - 4012943
Alignment:
| Q |
16 |
aattgcctctgattctgcttctgttaatttgcatttcctcagagacaatacatacattctggaagtaaggcattgccatatggaattgttgctagaaaat |
115 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| | | |
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| T |
4013101 |
aattgcctctgattctgcttctgttaattttcatttcgtcagagacaatacaggcattccggaagtaaggcattgcaatatggaattgttgctaggacag |
4013002 |
T |
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| Q |
116 |
ctaacttcgaaatgcgtccattatggtactctggtacaaatcatgtatgtgaaatatgt |
174 |
Q |
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| T |
4013001 |
ctaacttagaaatgcggcgattatgggactctagtattattcatgtatgtgaaatatgt |
4012943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 3990270 - 3990119
Alignment:
| Q |
16 |
aattgcctctgattctgcttctgttaatttgcatttcctcagagacaatacatacattctggaagtaaggcattgccatatggaattgttgctagaaaat |
115 |
Q |
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| T |
3990270 |
aattgcatctgattctgtttctattgatttgcatttcctcagacacaatacagggattctggaagtaaggcatttccagctggaattgttgctagaaaat |
3990171 |
T |
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| Q |
116 |
ctaacttcgaaatgcgtccattatggtactctggtacaaatcatgtatgtga |
167 |
Q |
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|||| || |||||||| ||||||||| ||||||| | ||||||||||||||| |
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| T |
3990170 |
ctaaatttgaaatgcggccattatgggactctggcataaatcatgtatgtga |
3990119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 4004691 - 4004529
Alignment:
| Q |
12 |
ttaaaattgcctctgattctgcttctgttaatttgcatttcctcagagacaatacatacattctggaagtaaggcattgccatatggaattgttgctaga |
111 |
Q |
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| T |
4004691 |
ttaaaattgtccctgattctgcttctgcttatttgcatttcctcagagacaatacaggcattccggaagtaaggcattgcaagatggaatgattgctaga |
4004592 |
T |
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| Q |
112 |
aaatctaacttcgaaatgcgtccattatggtactctggtacaaatcatgtatgtgaaatatgt |
174 |
Q |
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| T |
4004591 |
acatataattcggaaacacggccattccgagcctctggtacaaatcatgtatgtgaaatatgt |
4004529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 3951478 - 3951627
Alignment:
| Q |
18 |
ttgcctctgattctgcttctgttaatttgcatttcctcagagacaatacatacattctggaagtaaggcattgccatatggaattgttgctagaaaatct |
117 |
Q |
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||||||||||||||||||||||| |||| ||||||||||| ||||||| |||| |||||||||||||||||| |||||||| | || |||| |||| |
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| T |
3951478 |
ttgcctctgattctgcttctgttgatttttatttcctcagaagcaatacaggcattatggaagtaaggcattgccggatggaattttcgcaagaacatct |
3951577 |
T |
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| Q |
118 |
aacttcgaaatgcgtccattatggtactctggtacaaatcatgtatgtga |
167 |
Q |
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| T |
3951578 |
aactcggaaatgcggccattatgggacttcggtataagtcatgtatgtga |
3951627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 13400259 - 13400100
Alignment:
| Q |
18 |
ttgcctctgattctgcttctgttaatttgcatttcctcagagacaatacatacattctggaagtaaggcattgccatatggaattgt---tgctagaaaa |
114 |
Q |
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| T |
13400259 |
ttgcctctaattgagcttctgttaatttacatttcctcagagacaatacaggcattctgaaaataaggcattgccatatggaattgttgctgctagaaca |
13400160 |
T |
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| Q |
115 |
tctaacttcgaaatgcgtccattatggtactctggtacaaatcatgtatgtgaaatatgt |
174 |
Q |
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| T |
13400159 |
tctaactcggaaatgcggccattatgggactttggtataaataatgtatgtgaaatatgt |
13400100 |
T |
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