View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_61 (Length: 309)
Name: NF5717_low_61
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 40152185 - 40152378
Alignment:
| Q |
1 |
tctttcttttctttctttgtaagaaaaagaaaagaaaatattaaatgtcttgacatttttgggatgactcaactcatagtggaccgagtcaatgtcggtg |
100 |
Q |
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| T |
40152185 |
tctttcttttctttctttgtaagaaaaagaaaagaaaatattaaatgtcttgacatttttgggatgactcaactcatagtggaccgagtcaatgtcggtg |
40152284 |
T |
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| Q |
101 |
tttcgcaaaagatttttacgtgtataccctcatatttaataagcatatcccttacatttcccatttcgccctaaataaattttgatttcatatt |
194 |
Q |
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| T |
40152285 |
tttcgcaaaagatttttacgtgtatacccttatatttaataagcataccccttacatttcccatgtcgccctaaataaattttgatttcatatt |
40152378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 40152399 - 40152478
Alignment:
| Q |
221 |
atccctagatttccatcccaatctcacaccctttccgattttagtttctttgcgttttcttccacttctcatcttcatct |
300 |
Q |
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| T |
40152399 |
atccctagattcccatcccaatctcacaccctttccgattttagtttctttgcgttttcttccacttctcatcttcatct |
40152478 |
T |
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