View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_62 (Length: 305)
Name: NF5717_low_62
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 37000552 - 37000509
Alignment:
| Q |
230 |
atggctttgcatactatttatttaagctcgcagaaaaagatctc |
273 |
Q |
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| T |
37000552 |
atggctttgcatactatttatttaagctcgcagaaaaagatctc |
37000509 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 37000608 - 37000568
Alignment:
| Q |
66 |
atgaaaagtaagccacagaaataatttgattagatatataa |
106 |
Q |
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| T |
37000608 |
atgaaaagtaagccacagaaataatttgattagatatataa |
37000568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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