View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_63 (Length: 305)
Name: NF5717_low_63
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 14427207 - 14426933
Alignment:
| Q |
17 |
cttatgatgttatttttcattatagggtcgatttgagattttatctctatcaggaatgttagaagaatttgacaacaaaaatggctttaagacaatgggt |
116 |
Q |
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| T |
14427207 |
cttatgatgttatttttcattacagggtcgatttgagattttatctctatcaggaatgttagaagaatttgacaacaaaaatggctttaagacaatgggt |
14427108 |
T |
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| Q |
117 |
tactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14427107 |
tactttaaggtgtctttagtggatcctaatttaaacgttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaa |
14427008 |
T |
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| Q |
217 |
atgataaatgatttatgttgattttannnnnnnnnaaaagcaaaatgtgaatgtaagttcttgggtgtctatagtatt |
294 |
Q |
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| T |
14427007 |
atgataaatgatttatgttgatttt---ttttttttaaagcaaaatgtgaatgtaagttcttgggtgtctatagtatt |
14426933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 14417146 - 14416927
Alignment:
| Q |
19 |
tatgatgttatttttcattatagggtcgatttgagattttatctctatcaggaatgttagaagaatttgacaacaaaaatggctttaagacaatgggtta |
118 |
Q |
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|||||||||||||||||| | |||||| |||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||| ||| |
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| T |
14417146 |
tatgatgttatttttcatcacagggtcaatttgagattttatctctctcaggaatgttagaagtatttgacaacaataatggctttaagagaatgaatta |
14417047 |
T |
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| Q |
119 |
ctttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaat |
218 |
Q |
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| T |
14417046 |
ctttacggtgtctctagtggaacctaattcaaatgtttttggaggtgtagt---tgataagcttattgctgcatcattggtaaaggtatttctctcaagt |
14416950 |
T |
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| Q |
219 |
gataaatgatttatgttgatttt |
241 |
Q |
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|||| || ||||||||||||||| |
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| T |
14416949 |
gatacataatttatgttgatttt |
14416927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 3410118 - 3409917
Alignment:
| Q |
40 |
agggtcgatttgagattttatctctatcaggaatgttagaagaatttgacaacaaaaatggctttaagacaatgggttactttaaggtgtctttagtgga |
139 |
Q |
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|||||||||||||| || |||| |||||||| |||||||||| || ||||||||| | ||| | ||| | ||||||| |||||||||||||| | |||| |
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| T |
3410118 |
agggtcgatttgagcttgtatccctatcaggcatgttagaagtatgtgacaacaatagtggttgtaaaagaatgggtaactttaaggtgtctctggtggg |
3410019 |
T |
|
| Q |
140 |
tcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgatt |
239 |
Q |
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|||| ||||| || |||||||||||| || ||| ||||||||||||| ||||| | ||||||||||| | |||||||||||| ||||||||||||| |
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| T |
3410018 |
tcctgatttacgccctttgggaggtgtggtggctaataagcttattgcagcatcttcagtaaaggtattgttttcaaatgataaacaatttatgttgatt |
3409919 |
T |
|
| Q |
240 |
tt |
241 |
Q |
| |
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|| |
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| T |
3409918 |
tt |
3409917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 241
Target Start/End: Original strand, 4867157 - 4867288
Alignment:
| Q |
110 |
aatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtattt |
209 |
Q |
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|||| ||||||| ||||||||| |||| | ||| ||| | |||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
4867157 |
aatgagttacttcaaggtgtctctagtaaaccctgattcacgccttttggtaggtgtagttgctgataagtttattgcggcatcattagtaaaggtattg |
4867256 |
T |
|
| Q |
210 |
ctctcaaatgataaatgatttatgttgatttt |
241 |
Q |
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|||||||||||| || |||||||| |||||| |
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| T |
4867257 |
ttctcaaatgatagataatttatgtagatttt |
4867288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 4244582 - 4244719
Alignment:
| Q |
104 |
taagacaatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaag |
203 |
Q |
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||||| |||| || |||||||||||||| || | ||| |||| | ||||||||| ||| ||||||| ||||||||||||||||||||| || |||||| |
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| T |
4244582 |
taagaaaatgagtaactttaaggtgtctctacttactccgaattcacaccttttggcaggcgtagttgttgataagcttattgcggcatcattggtaaag |
4244681 |
T |
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| Q |
204 |
gtatttctctcaaatgataaatgatttatgttgatttt |
241 |
Q |
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| T |
4244682 |
gtattgttctcatatgataaacaatttatgttgatttt |
4244719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 4813998 - 4814117
Alignment:
| Q |
102 |
tttaagacaatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaa |
201 |
Q |
| |
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||||||| |||||||||||| ||||||||| | | || || | || | |||||||| ||| ||||||||||||||||||||||| ||||| || |||| |
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| T |
4813998 |
tttaagaaaatgggttacttcaaggtgtctctcgagggtcatggttcacgccttttggcaggcgtagttgctgataagcttattgcagcatcattagtaa |
4814097 |
T |
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| Q |
202 |
aggtatttctctcaaatgat |
221 |
Q |
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||||||| |||||||||||| |
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| T |
4814098 |
aggtattgctctcaaatgat |
4814117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 4251271 - 4251360
Alignment:
| Q |
152 |
ccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgatttt |
241 |
Q |
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||||||||| | |||||||||||||||||||| |||||||| || |||||||||| ||| |||||||| | ||||||||||||||| |
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| T |
4251271 |
ccttttgggggtcgtagttgctgataagcttatcgcggcatcgttagtaaaggtatcgttcttaaatgatatacaatttatgttgatttt |
4251360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 7159055 - 7159144
Alignment:
| Q |
152 |
ccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgatttt |
241 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||| ||| ||||||||| || ||| ||||||||||| |
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| T |
7159055 |
ccttttggaaggtgtagttgctgataagcttattgcagcatcattggtaaaggtattgctcacaaatgatagataattcatgttgatttt |
7159144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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