View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_low_64 (Length: 303)

Name: NF5717_low_64
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_low_64
NF5717_low_64
[»] chr4 (3 HSPs)
chr4 (15-286)||(43608267-43608538)
chr4 (57-107)||(34979239-34979289)
chr4 (57-109)||(13901179-13901231)
[»] chr5 (1 HSPs)
chr5 (20-109)||(34221340-34221429)
[»] chr7 (4 HSPs)
chr7 (34-109)||(20909999-20910074)
chr7 (34-91)||(20909314-20909371)
chr7 (59-107)||(1818313-1818361)
chr7 (142-198)||(3761029-3761085)
[»] chr2 (2 HSPs)
chr2 (20-109)||(30934154-30934243)
chr2 (21-107)||(24667755-24667841)
[»] chr1 (1 HSPs)
chr1 (47-109)||(34152470-34152532)
[»] scaffold0363 (1 HSPs)
scaffold0363 (34-109)||(16238-16313)
[»] scaffold0148 (1 HSPs)
scaffold0148 (34-109)||(33913-33988)
[»] chr8 (2 HSPs)
chr8 (34-109)||(14402540-14402615)
chr8 (19-95)||(27656288-27656364)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 43608538 - 43608267
Alignment:
Q  15 atgaacaaatgtaaatagattaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttgatgcaa 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  43608538 atgaacaaatgtaaacagattaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaatcttctaccaatccttcttcaatgatttgatgcaa 43608439  T
Q  115 tgatttgggtaacaaacttttggtatattttttatggaacgtgatgaatgaataggaggtaggagtaaggctgtactgattttactatataacatacact 214  Q
     |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43608438 agatttgggtaacaaacttgtggtagattttttatggaacgtgatgaatgaataggaggtaggagtaaggctgtactgattttactatataacatacact 43608339  T
Q  215 ccatgcccccaacaaatccgaaaaaggttacacaggttcacaagttataaagcgaacaatgaatcaaaaatg 286  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43608338 ccatgcccccaacaaatctgaaaaaggttacacaggttcacaagttataaagcgaacaatgaatcaaaaatg 43608267  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 34979289 - 34979239
Alignment:
Q  57 ttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgattt 107  Q
    |||| |||||| ||||||| |||||||||| ||||||||||| ||||||||    
T  34979289 ttgatgtcaaatgtgtgtagaaaccttctagcaatccttcttcaatgattt 34979239  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 13901179 - 13901231
Alignment:
Q  57 ttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttga 109  Q
    ||||||||||| ||||||| |||||||||| ||||| ||||  ||||||||||    
T  13901179 ttgacgtcaaatgtgtgtagaaaccttctagcaatcattctccaatgatttga 13901231  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 34221429 - 34221340
Alignment:
Q  20 caaatgtaaatagattaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttga 109  Q
    ||||||||||| | ||||||||| ||||||||| || || |||||||| ||||||| ||  |||||| ||||||||||||||||||||||    
T  34221429 caaatgtaaatcggttaaaagatgcattacttgtttattaacgtcaaatgtgtgtagaagtcttctaacaatccttctttaatgatttga 34221340  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 20909999 - 20910074
Alignment:
Q  34 ttaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttga 109  Q
    ||||||||| |||||| || ||||||||||||||  ||||||||||||||||| ||||| ||||  ||||||||||    
T  20909999 ttaaaagattcattacctgttttttgacgtcaaatatgtgtaaaaaccttctatcaatcattctccaatgatttga 20910074  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 20909314 - 20909371
Alignment:
Q  34 ttaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaat 91  Q
    ||||||||| |||| |||| |||||||||||||| ||||||| |||||||||| ||||    
T  20909314 ttaaaagattcattccttgttttttgacgtcaaatgtgtgtagaaaccttctagcaat 20909371  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 1818313 - 1818361
Alignment:
Q  59 gacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgattt 107  Q
    ||||||||||| ||||| |||| ||||| ||||||||||| ||||||||    
T  1818313 gacgtcaaacgagtgtagaaactttctaacaatccttcttcaatgattt 1818361  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 3761085 - 3761029
Alignment:
Q  142 ttttttatggaacgtgatgaatgaataggaggtaggagtaaggctgtactgatttta 198  Q
    ||||||| |||| |||||| ||||||||||||||||||||  | ||||||| |||||    
T  3761085 ttttttagggaaagtgatggatgaataggaggtaggagtagtggtgtactggtttta 3761029  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 30934243 - 30934154
Alignment:
Q  20 caaatgtaaatagattaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttga 109  Q
    ||||||||||  |||||||| ||||||||  || |||||||| | ||| ||||||| ||||| |||| ||||||||||| ||||||||||    
T  30934243 caaatgtaaagggattaaaatatacattatctgttttttgacattaaatgtgtgtagaaaccatctaacaatccttcttcaatgatttga 30934154  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 24667841 - 24667755
Alignment:
Q  21 aaatgtaaatagattaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgattt 107  Q
    ||||||||| |  ||| ||||| |||||| || || |||||||||||  |||||| |||||||||| ||||| ||||| ||||||||    
T  24667841 aaatgtaaacaatttacaagatgcattacctgtttcttgacgtcaaatatgtgtataaaccttctagcaatctttcttcaatgattt 24667755  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 34152470 - 34152532
Alignment:
Q  47 tacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttga 109  Q
    |||||| |||||||||||||| | ||||| ||||||||||||||| ||||||  |||||||||    
T  34152470 tacttgttttttgacgtcaaaagagtgtagaaaccttctaccaattcttcttctatgatttga 34152532  T

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Target: scaffold0363 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 16313 - 16238
Alignment:
Q  34 ttaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttga 109  Q
    |||||||||||| ||| || || ||||||||||| ||||||| ||| | |||| |||||||| |||| ||||||||    
T  16313 ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatccttttttattgatttga 16238  T

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Target: scaffold0148 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 33988 - 33913
Alignment:
Q  34 ttaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttga 109  Q
    ||||||||| |||||| || || ||||||||||| ||||||| ||||||| || ||||| || || ||||||||||    
T  33988 ttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaaccttttaacaatcattattcaatgatttga 33913  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 14402540 - 14402615
Alignment:
Q  34 ttaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatccttctttaatgatttga 109  Q
    |||||||||||| ||| || || ||||||||||| ||||||| ||| | |||| |||||||| |||| ||||||||    
T  14402540 ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatccttttttattgatttga 14402615  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 27656364 - 27656288
Alignment:
Q  19 acaaatgtaaatagattaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaaccttctaccaatcctt 95  Q
    |||||||||||  | |||||||||  |||||||| || ||||||||||| ||||||  ||||||||||  |||||||    
T  27656364 acaaatgtaaacggtttaaaagatgtattacttgtttcttgacgtcaaatgtgtgtccaaaccttctagtaatcctt 27656288  T

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