View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_68 (Length: 296)
Name: NF5717_low_68
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 27354809 - 27355036
Alignment:
| Q |
1 |
caacatcatattcgacaatataggaacggtatttcgttcggagcttgttgacagccttgtccaattcagtaccagggttactcgccaaaggtcctactaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27354809 |
caacattatattcgacaatataggaacggtatttcgttcggagcttgttgacggccttgtccaattcagtaccagggttactcgccaaaggtcctactaa |
27354908 |
T |
|
| Q |
101 |
agaatcacgaaaagatagagttagaagaaaaccattacactccgatccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacg |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27354909 |
agaatcacgaaaagatagaattagaagaaaaccattacactccgatccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacg |
27355008 |
T |
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| Q |
201 |
tttcaacgttggatcttgacattttttg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27355009 |
tttcaacgttggatcttgacattttttg |
27355036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 42996045 - 42996261
Alignment:
| Q |
1 |
caacatcatattcgacaatataggaacggtatttcgttcggagcttgttgacagccttgtccaattcagtaccagggttactcgccaaaggtcctactaa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42996045 |
caacatcatattcgacaatataggaacaatatttcgttcagagcttgttgacggacttgtccaattcagtaccagggttactcgccaaaggtcctactaa |
42996144 |
T |
|
| Q |
101 |
agaatcacgaaaagatagagttagaagaaaaccattacactccgatccaaatgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacg |
200 |
Q |
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| T |
42996145 |
agaatcacgaaaagataaagttagaagaaaaccactacactccgatcc-aatgaaagttaaacttgtttttaccggtaagtgcatggtaggacaacaacg |
42996243 |
T |
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| Q |
201 |
tttcaacgttggatcttg |
218 |
Q |
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|||||||||||||||||| |
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| T |
42996244 |
tttcaacgttggatcttg |
42996261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 50232485 - 50232597
Alignment:
| Q |
1 |
caacatcatattcgacaatataggaacggtatttcgttcggagcttgttgacagccttgtccaattcagtaccagggttactcgccaaaggtcctactaa |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| |||||| ||| ||||| |
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| T |
50232485 |
caacatcatattcgacaatataggagcggtatttcgtccggagcttgttgacagctttgtccaattcagtagcagggttactcaccaaagatccaactaa |
50232584 |
T |
|
| Q |
101 |
agaatcacgaaaa |
113 |
Q |
| |
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|||| |||||||| |
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| T |
50232585 |
agaaacacgaaaa |
50232597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 42998332 - 42998399
Alignment:
| Q |
212 |
gatcttgacattttttgttgatcttagcaatttacggtgaattccaacaactaggatgatatgaacac |
279 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||| |
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| T |
42998332 |
gatcttgacattttttgttgatcttaacaatttacagtgaattccaacaaccagaatgatatgaacac |
42998399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 42998925 - 42998992
Alignment:
| Q |
212 |
gatcttgacattttttgttgatcttagcaatttacggtgaattccaacaactaggatgatatgaacac |
279 |
Q |
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|
|||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||| |
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| T |
42998925 |
gatcttgacattttttgttgatcttaacaatttatagtgaattccaacaaccagaatgatatgaacac |
42998992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 21005699 - 21005829
Alignment:
| Q |
1 |
caacatcatattcgacaatataggaacggtatttcgttcggagcttgttgacagccttgtccaattcagtaccagggttactcgccaaaggtcctactaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||| |||||| ||| ||||| |
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| T |
21005699 |
caacatcatattcgacaatataggagcggtatttcatccggagcttgttgacagctttgtccaattcagtagcagggttactcaccaaagatccaactaa |
21005798 |
T |
|
| Q |
101 |
agaatcacgaaaagatagagttagaagaaaa |
131 |
Q |
| |
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|||| |||||||| | ||||||||||||| |
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| T |
21005799 |
agaaacacgaaaaagaaaagttagaagaaaa |
21005829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 16981686 - 16981510
Alignment:
| Q |
1 |
caacatcatattcgacaatataggaacggtatttcgttcgg-------agcttgttgacagccttgtccaattcagtaccagggttactcgccaaaggtc |
93 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| || ||||| || |||||||||||||||||| ||||||| | | ||||||||| |
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| T |
16981686 |
caacatcatattcaacaatataggaacggtatttggttcgcgcttcgcagtttgtttaccgccttgtccaattcagtaacagggttgcacaccaaaggtc |
16981587 |
T |
|
| Q |
94 |
ctactaaagaatcacgaaaagatagagttagaagaaaaccattacactccgatccaaatgaaagctaaacttgtttt |
170 |
Q |
| |
|
|||||||| | |||| ||| | ||| |||| |||||| |||| | || ||| |||||||||| ||||||||||| |
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| T |
16981586 |
ctactaaaataacacgtaaaaactgagatagaggaaaacaattatattcgaatcaaaatgaaagcaaaacttgtttt |
16981510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 16981509 - 16981455
Alignment:
| Q |
151 |
atgaaagctaaacttgtttttaccggtaaatgcatggtaggacaacaacgtttcaa |
206 |
Q |
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|||||||||||||||||||| ||| || | |||||||||||||||||||||||||| |
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|
| T |
16981509 |
atgaaagctaaacttgtttt-accagttagtgcatggtaggacaacaacgtttcaa |
16981455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 39180631 - 39180538
Alignment:
| Q |
1 |
caacatcatattcgacaatataggaacggtatttcgttcggagcttgttgacagccttgtccaattcagtaccagggttactcgccaaaggtcc |
94 |
Q |
| |
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||||||||||||| ||||||||||| | |||||| || | |||||||| || ||| |||||||||||||| | || | |||| |||||||||| |
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| T |
39180631 |
caacatcatattcaacaatataggacctgtattttgtcagcagcttgttaaccgccctgtccaattcagtagctggatgactcaccaaaggtcc |
39180538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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