View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_7 (Length: 627)
Name: NF5717_low_7
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 214 - 610
Target Start/End: Original strand, 1450703 - 1451100
Alignment:
| Q |
214 |
ttaacaaagtcattcttcctaataggtactcttttcttttgctgcacaatgggagtgcctgttaggtaccaagtcttatagaacaagaccctctcgctgt |
313 |
Q |
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| T |
1450703 |
ttaacaaagtcattcttcctaataggtactcttttcttttgctgcacaatgggagtgtctgttaggtaccaagtcttatagaacaagaccctctcgctgt |
1450802 |
T |
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| Q |
314 |
ggtggatgatcaggttatagcctttcattagtcagtagttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagaca |
413 |
Q |
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| T |
1450803 |
ggtggatgatcaggttatagcctttcattagtcagtacttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagaca |
1450902 |
T |
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| Q |
414 |
ttttaaatgtttgattaagcattacttcttgaatttgttagtatag-tttttgagtgtatggatttattgcataggataggtagatattatatcgtgtaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1450903 |
ttttaaatgtttgattaagcattacttcttgaatttgttagtatagttttttgagtgcatggatttattgcataggataggtagatattatatcgtgtaa |
1451002 |
T |
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| Q |
513 |
atatggatatgatatcctgtacnnnnnnnattgattgttttaagcctatgtaagagatcttgttgtataattgagacacacagtatttgacatatgtg |
610 |
Q |
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| T |
1451003 |
atatggatatgatatcctgtactttttttattgattgttttaagcctatataagagatcttgttgtataattgagacacacagtatttgacatatgtg |
1451100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 35034494 - 35034542
Alignment:
| Q |
258 |
cacaatgggagtgcctgttaggtaccaagtcttatagaacaagaccctc |
306 |
Q |
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| T |
35034494 |
cacaatgggagtgcttgttaggtactgagacttaaagaacaagaccctc |
35034542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 48655884 - 48656013
Alignment:
| Q |
32 |
gggtgtggatctgttggtgcgatatgaagatatggtagggcgaagggcaagggttgtggtgatcgagggtgtggtcgatgggcgacagtggcgagagagg |
131 |
Q |
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| T |
48655884 |
gggtgtggatctgctggtgtgatatgaagatatggtagggcgaagggcaagggttgtggtgatcgagggtgtggtcgatgggcgacagtggcgagagagg |
48655983 |
T |
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| Q |
132 |
gtggagggtgtggtagatgggggataacgg |
161 |
Q |
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| T |
48655984 |
gtggagggtgtggtagatgggggatgacgg |
48656013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 328 - 462
Target Start/End: Original strand, 52473849 - 52473984
Alignment:
| Q |
328 |
ttatagcctttcattagtcagt--agttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagacattttaaatgttt |
425 |
Q |
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||||||| ||||||||||| || |||||| || ||| |||||||| ||| || ||||||| ||||||| || ||||||||||||| |||||| ||| |
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| T |
52473849 |
ttatagcttttcattagtctgtgcagttgacatcttgccattgactggttttctg-cataatttagttcagctgcattagacaagacaatttaaagtttt |
52473947 |
T |
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| Q |
426 |
gattaagcattacttcttgaatttgttagtatagttt |
462 |
Q |
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| T |
52473948 |
gattaagtattacttcttgaatttgttagtatagttt |
52473984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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